PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010527829.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family BBR-BPC
Protein Properties Length: 277aa    MW: 31273.7 Da    PI: 10.2069
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010527829.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind304.53.7e-9312771301
       GAGA_bind   1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki....rernlalsekkaavaerd.........maflqrdkalaernkalverdnkll 82 
                     mdddg+  rn+gyyepa ++k  lglq m ++ +r++k+    r+ nl ++++++++++rd         m++    +++++       +++k++
  XP_010527829.1   1 MDDDGF--RNWGYYEPA-NFKFSLGLQFMPTV-DRNTKPqlpgRDPNL-MTGPDGPFHTRDyvvsetpipMNY----AWINQ-------HKDKFF 79 
                     99**99..9********.99999*********.9*****99999****.************999998888888....89999.......789*** PP

       GAGA_bind  83 alllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkk 177
                     ++l+ +++         ++l++t+   s+q l+      ++ ++   + +e++pi + +e a+ kk+k  + ++ ++k+kk  k+k+ +    ++
  XP_010527829.1  80 NMLPPNHG---------NMLPETSGSPSMQFLH------PPLDV--GNRVEENPIPDDEEIAQAKKRKPGGDSKGTKKRKKPWKQKDGN---GNE 154
                     ****6665.........89********999933......34442..3445678888888888877777777777777777777777732...223 PP

       GAGA_bind 178 vkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekL 272
                     ++ e++++ ++a+k  +d+v+ngvs+D+s+lPvPvC+C G+++qCY+WG+GGWqSaCCtt+iSvyPLP+s krrgaRi+grKmSqgafkk+LekL
  XP_010527829.1 155 SN-ERVKRVRQAKKSAVDVVINGVSMDISGLPVPVCTCSGSPQQCYRWGCGGWQSACCTTNISVYPLPMSMKRRGARISGRKMSQGAFKKVLEKL 248
                     33.33333445666679****************************************************************************** PP

       GAGA_bind 273 aaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                      a+G+d+ np+DL++ WA+HGtnkfvtir
  XP_010527829.1 249 VAQGFDFWNPIDLRSRWARHGTNKFVTIR 277
                     ****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062175.8E-901277IPR010409GAGA-binding transcriptional activator
SMARTSM012265.8E-1441277IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MDDDGFRNWG YYEPANFKFS LGLQFMPTVD RNTKPQLPGR DPNLMTGPDG PFHTRDYVVS  60
ETPIPMNYAW INQHKDKFFN MLPPNHGNML PETSGSPSMQ FLHPPLDVGN RVEENPIPDD  120
EEIAQAKKRK PGGDSKGTKK RKKPWKQKDG NGNESNERVK RVRQAKKSAV DVVINGVSMD  180
ISGLPVPVCT CSGSPQQCYR WGCGGWQSAC CTTNISVYPL PMSMKRRGAR ISGRKMSQGA  240
FKKVLEKLVA QGFDFWNPID LRSRWARHGT NKFVTIR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127142KRKPGGDSKGTKKRKK
2138142KKRKK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010527829.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010527830.10.0PREDICTED: protein BASIC PENTACYSTEINE2
SwissprotQ9LDE21e-126BPC2_ARATH; Protein BASIC PENTACYSTEINE2
TrEMBLA0A1J3CP141e-128A0A1J3CP14_NOCCA; Protein BASIC PENTACYSTEINE2
STRINGXP_010527829.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28932769
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.31e-129basic pentacysteine 2
Publications ? help Back to Top
  1. Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D
    DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro.
    Plant Methods, 2010. 6: p. 25
    [PMID:21108821]
  2. Simonini S,Kater MM
    Class I BASIC PENTACYSTEINE factors regulate HOMEOBOX genes involved in meristem size maintenance.
    J. Exp. Bot., 2014. 65(6): p. 1455-65
    [PMID:24482368]