![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010527776.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 194aa MW: 21930.6 Da PI: 7.3532 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.9 | 8.6e-19 | 71 | 125 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++t+eq + Le+ F++n++++ +++ eLAk+l L rq+ vWFqNrRa+ k XP_010527776.1 71 RKKLRLTREQSRLLEDSFRQNHTLNPKQKDELAKQLMLRPRQIEVWFQNRRARSK 125 78889************************************************98 PP | |||||||
2 | HD-ZIP_I/II | 119.8 | 1.4e-38 | 71 | 159 | 1 | 90 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rl++eq++lLE+sF+++++L+p++K ela++L l+prq++vWFqnrRAR k+kq+E+++e+Lkr++ +l+e+n+rL++ev+eLr + XP_010527776.1 71 RKKLRLTREQSRLLEDSFRQNHTLNPKQKDELAKQLMLRPRQIEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQSEVDELR-A 159 69*************************************************************************************9.4 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.18E-18 | 63 | 128 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.167 | 67 | 127 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.0E-18 | 69 | 131 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.27E-16 | 70 | 128 | No hit | No description |
Pfam | PF00046 | 4.9E-16 | 71 | 125 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.6E-18 | 76 | 125 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00027 | 0 | 102 | 125 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 2.7E-10 | 127 | 161 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 7.1E-19 | 127 | 170 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 194 aa Download sequence Send to blast |
MAILPENSSN LDLTISVPGF SSSPPSEDRS GGKEQLNLDI NQVPLSEDGG DIDGEDDEFV 60 SHGNDVVVPP RKKLRLTREQ SRLLEDSFRQ NHTLNPKQKD ELAKQLMLRP RQIEVWFQNR 120 RARSKLKQTE MECEYLKRWF GSLTEQNRRL QSEVDELRAM KVVVPSTSAS ASSSMCPRCQ 180 RVSTTSSSVP KNTA |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 119 | 127 | RRARSKLKQ |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_010527776.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010527776.1 | 1e-141 | PREDICTED: homeobox-leucine zipper protein ATHB-17-like isoform X2 | ||||
Swissprot | Q8S9N6 | 7e-92 | ATB17_ARATH; Homeobox-leucine zipper protein ATHB-17 | ||||
TrEMBL | A0A087GU16 | 1e-100 | A0A087GU16_ARAAL; Uncharacterized protein | ||||
STRING | XP_010527775.1 | 1e-109 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G01430.1 | 5e-86 | homeobox-leucine zipper protein 17 |
Publications ? help Back to Top | |||
---|---|---|---|
|