PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

ERF

Protein Properties

Length: 262aa MW: 29272.4 Da PI: 5.497

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010527715.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	64.6	2e-20	99	148	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp + +r++lg+f+tae Aa a+++a+++++g XP_010527715.1 99 QYRGVRQRP-WGKWAAEIRDPQ----KaARVWLGTFDTAEAAALAYDEAALRFKG 148 69*****.******93....36*********************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	7.73E-21	98	157	No hit	No description
PROSITE profile	PS51032	25.027	99	156	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	3.4E-33	99	157	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.81E-22	99	157	IPR016177	DNA-binding domain
SMART	SM00380	3.2E-37	99	162	IPR001471	AP2/ERF domain
Pfam	PF00847	3.0E-14	100	148	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.3E-11	100	111	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.3E-11	122	138	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MEGKRPFRTD EWEKEEADDD ENIFPVFSAQ SQHDTRVMVS ALTQVIGSNN ADQSSTSHEN 60 INHIYPNHQT SVYDPQYHSQ PPPVAPAQDQ EGNLRRRQQY RGVRQRPWGK WAAEIRDPQK 120 AARVWLGTFD TAEAAALAYD EAALRFKGSK AKLNFPERVQ FGTVVTPNSG YYDHSCSSNP 180 HIDTSNTMSS YEQYYYHHDQ GGNTIDTSSY SSPNGGFSML PSTTTTTGMG SSSSGGSWRQ 240 EDDQDSSGYF HFGGSSYPHS GF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	7e-26	98	159	1	63	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as a transcriptional activator of the phytosulfokine PSK5 peptide hormone. Binds to the GCC-box pathogenesis-related promoter element. Rate-limiting factor of quiescent center cell division active when surrounding stem cells are damaged. Is a proteolytic target of APC/C-FZR1 complex. {ECO:0000269\|PubMed:24158907}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00495	DAP	Transfer from AT5G07310	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010527715.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by brassinosteroid, but not regulated by ethylene. {ECO:0000269\|PubMed:24158907}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010527715.1	0.0	PREDICTED: ethylene-responsive transcription factor ERF114-like isoform X1
Swissprot	Q9LY29	5e-67	EF115_ARATH; Ethylene-responsive transcription factor ERF115
TrEMBL	R0EUW4	8e-67	R0EUW4_9BRAS; Uncharacterized protein
STRING	XP_010527715.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5292	18	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61890.1	1e-46	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang Y, et al. Shade avoidance 6 encodes an Arabidopsis flap endonuclease required for maintenance of genome integrity and development. Nucleic Acids Res., 2016. 44(3): p. 1271-84 [PMID:26721386] Zhang Y, et al. TOPOISOMERASE1α Acts through Two Distinct Mechanisms to Regulate Stele and Columella Stem Cell Maintenance. Plant Physiol., 2016. 171(1): p. 483-93 [PMID:26969721] Heyman J, et al. The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence. Nat Plants, 2016. 2(11): p. 16165 [PMID:27797356] Kong X, et al. PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis. Cell Rep, 2018. 22(5): p. 1350-1363 [PMID:29386120]