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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
XP_010527538.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family |
CO-like |
Protein Properties |
Length: 443aa MW: 49779.6 Da PI: 5.8357 |
Description |
CO-like family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
XP_010527538.1 | genome | NCBI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-B_box | 22.3 | 2.6e-07 | 13 | 44 | 3 | 34 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeH 34
+r C+ + + +++++C +++ +lC+ C + H
XP_010527538.1 13 ARACDSCVKRRARWYCPSDDAFLCQACDGSVH 44
578************************99888 PP
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2 | CCT | 68 | 2.6e-23 | 386 | 429 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44
Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a
XP_010527538.1 386 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 429
9*****************************************97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 443 aa
Download sequence Send
to blast |
MKSSANAVGG KTARACDSCV KRRARWYCPS DDAFLCQACD GSVHSANPLA RRPERVRLKS 60 ASSSRTHRPT TVSPPGTAKW HHGFTRKART PRGSGSAGKP NQRAVFFHDL VPEISVEDQT 120 ENYEEEQLIF QVPVLDPTVS EQYRDDAIEE KTGFPLPELI KFADMNEEND EDNAESCLDR 180 FFPTDMELAE FAADVDTLLG HNLETESFAT EDLGLGDGLS VCGRSSSMML KLENEDVHEE 240 ETVAREGTPM ELFYERKGMD MTPFELSFDQ DHSHRAFEEE EEDEEKNVIN VNTGERESVR 300 SGGSSNISHS IKKKNVLMLR LNHEAVISTW GGKGPPWTAG KPPELDLDDN SWHISMGENG 360 NEVPLDRYGG RFCGLGLQAA MMDGGREARV SRYREKRRTR LFSKKIRYEV RKLNAEKRPR 420 MKGRFVKRAS IASITSSLPL LTK
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 396 | 412 | RRTRLFSKKIRYEVRKL |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT1G25440.1 | 1e-145 | B-box type zinc finger protein with CCT domain |