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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
XP_010527508.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family |
MIKC_MADS |
Protein Properties |
Length: 225aa MW: 25509.7 Da PI: 8.3271 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
XP_010527508.1 | genome | NCBI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 93.7 | 8.4e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
kri+n rqvtfskRrng++KKA+ELS+LCdaevaviifss+gklye+ss
XP_010527508.1 9 KRIDNVNSRQVTFSKRRNGLMKKAKELSILCDAEVAVIIFSSSGKLYEFSS 59
79***********************************************96 PP
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2 | K-box | 32 | 5e-12 | 82 | 169 | 6 | 87 |
K-box 6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskK......nellleqieelqkkekel 87
+ ++ +++ ++ ++ Lk+e+e L +++G++L+ L++ eL +Le+qL+++l +i+++K +++ll+qie+++ + ++l
XP_010527508.1 82 QHQQPLQDNYAEKKTSDSLKSELERLHLCYERMKGKELDGLNFSELLSLENQLNEALLSIKDQKkfrlvqTQVLLNQIERSRLQLEKL 169
3334444455678899********************************************9998444444699999999998877665 PP
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Protein Features
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
SMART | SM00432 | 3.8E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.492 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.75E-32 | 2 | 77 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 9.44E-42 | 2 | 69 | No hit | No description |
PRINTS | PR00404 | 9.8E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.8E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.8E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.8E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 8.352 | 90 | 199 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 2.6E-8 | 92 | 168 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 225 aa
Download sequence Send
to blast |
MGRGRIEIKR IDNVNSRQVT FSKRRNGLMK KAKELSILCD AEVAVIIFSS SGKLYEFSSG 60 SMHQTLSRYG YSSPASDQRQ QQHQQPLQDN YAEKKTSDSL KSELERLHLC YERMKGKELD 120 GLNFSELLSL ENQLNEALLS IKDQKKFRLV QTQVLLNQIE RSRLQLEKLG RRSTGPPLES 180 TLANTVSRMF ASLPIPDTRM GCNSSSSDDD DDSNDHHSDT CLHLG
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor involved in the negative regulation of flowering, probably through the photoperiodic pathway. Prevents premature flowering. Downstream regulator of a subset of the MIKC* MADS-controlled genes required during pollen maturation. {ECO:0000269|PubMed:17521410, ECO:0000269|PubMed:18034896, ECO:0000269|PubMed:18799658}. |