PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010527496.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family M-type_MADS
Protein Properties Length: 215aa    MW: 24229.3 Da    PI: 9.8345
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010527496.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF65.17.4e-211158350
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    ++n+ +++ +f +R+ +++KKAeELS+LC+++vavi ++++g+l++++
  XP_010527496.1 11 SSNDQRKKSSFQRRQLTVMKKAEELSTLCGTQVAVICYGKDGELQTWP 58
                    89*********************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.7E-7160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006613.652157IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-141186IPR002100Transcription factor, MADS-box
PfamPF003191.0E-141257IPR002100Transcription factor, MADS-box
CDDcd002661.03E-151385No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MTRSSVSSPP SSNDQRKKSS FQRRQLTVMK KAEELSTLCG TQVAVICYGK DGELQTWPRD  60
LSKVRELAVN YMKQNDTKKR KKSLNLSELR GKAEKGCLPK TKSEKGFELN TQKLHALSAE  120
KLSELGDNLG REMKTLQERL RFLGTQKQKK NAEENQSRNL CRDQENQEPA IPSGLQGNHQ  180
AFMLSDAPFD YLSETWLSNS EFLGTEISGQ IGNNG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17781KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010527496.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010527496.11e-158PREDICTED: agamous-like MADS-box protein AGL75
STRINGXP_010527496.11e-157(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56620126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65330.12e-22AGAMOUS-like 78