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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010527496.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 215aa MW: 24229.3 Da PI: 9.8345 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 65.1 | 7.4e-21 | 11 | 58 | 3 | 50 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 ++n+ +++ +f +R+ +++KKAeELS+LC+++vavi ++++g+l++++ XP_010527496.1 11 SSNDQRKKSSFQRRQLTVMKKAEELSTLCGTQVAVICYGKDGELQTWP 58 89*********************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.7E-7 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 13.652 | 1 | 57 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.96E-14 | 11 | 86 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.0E-14 | 12 | 57 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.03E-15 | 13 | 85 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MTRSSVSSPP SSNDQRKKSS FQRRQLTVMK KAEELSTLCG TQVAVICYGK DGELQTWPRD 60 LSKVRELAVN YMKQNDTKKR KKSLNLSELR GKAEKGCLPK TKSEKGFELN TQKLHALSAE 120 KLSELGDNLG REMKTLQERL RFLGTQKQKK NAEENQSRNL CRDQENQEPA IPSGLQGNHQ 180 AFMLSDAPFD YLSETWLSNS EFLGTEISGQ IGNNG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 77 | 81 | KKRKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010527496.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010527496.1 | 1e-158 | PREDICTED: agamous-like MADS-box protein AGL75 | ||||
STRING | XP_010527496.1 | 1e-157 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM566 | 20 | 126 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65330.1 | 2e-22 | AGAMOUS-like 78 |