PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010527162.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family GATA
Protein Properties Length: 282aa    MW: 30804.5 Da    PI: 8.2645
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010527162.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.81.5e-18198232135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     Cs+Cg+ kTp+WR gp g+ktLCnaCG+++++ +l
  XP_010527162.1 198 CSHCGVQKTPQWRMGPLGTKTLCNACGVRFKSGRL 232
                     *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169924.4E-781271IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.464192228IPR000679Zinc finger, GATA-type
SMARTSM004013.2E-14192242IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.23E-14195256No hitNo description
CDDcd002021.30E-15197247No hitNo description
PfamPF003202.3E-16198232IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.107.7E-14198230IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440198223IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MECVEAFLND FAVDDLLDFC MADGFEREEG RRDEDEREPE KDCNFSDQSV CLEDLLSFPG  60
SELGLPVGDL AELEWLSNFV EDSFSESYHS GDFPVKSTTG DDAPTAAMEA VEPRFTRNPV  120
PVKPRTKRRR TSRRVWTLSP PSSATGPSYS SSEAPNKAAP KKGNKRGRRK AEAVSSSGGG  180
GGGKEHKARG SCKSNQPCSH CGVQKTPQWR MGPLGTKTLC NACGVRFKSG RLLPEYRPAS  240
SPTFSTILHS NSHRKVLELR LNKAAPPGRV GSNPVMCPNP VR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1159165PKKGNKR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010527162.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010527162.10.0PREDICTED: GATA transcription factor 7
SwissprotO655153e-92GATA7_ARATH; GATA transcription factor 7
TrEMBLA0A178UWZ07e-90A0A178UWZ0_ARATH; GATA transcription factor
STRINGXP_010527162.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM146541720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36240.11e-40GATA transcription factor 7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]