PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010526995.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

G2-like

Protein Properties

Length: 321aa MW: 34942.9 Da PI: 4.9492

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010526995.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	108	5.2e-34	47	101	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl XP_010526995.1 47 KQRLRWTNELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 101 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.337	44	104	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.0E-32	46	102	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.76E-18	46	101	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.1E-26	47	102	IPR006447	Myb domain, plants
Pfam	PF00249	1.4E-9	49	100	IPR001005	SANT/Myb domain
Pfam	PF14379	2.2E-22	134	179	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MFQTSNVLNA NLACSSSPIP GDRLDLSPME PINGGNNANN NPSLASKQRL RWTNELHERF 60 VDAVAQLGGP DRATPKGVLR VMGVQGLTIY HVKSHLQKYR LAKYLPDSSS EGKQMDKKES 120 GDMLAVLDGS SGTQITEALK LQMEVQKRLH EQLEVQRQLQ QRIEAQGKYL KKIIEEQQRL 180 SGVIGEPSDP REGDNSPEGD NGNDPGTPAA ISESPIQDKS GKEGGKEKSL SVDNESLSSY 240 PEPLTPDSGF NNDYPRDRSG GEERSSKKPR LARGGVEPLI LESGLDPLFI LKGQCDNPSG 300 TMVGGSEARL EDLDKVSVEN L

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	9e-25	47	104	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	9e-25	47	104	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	9e-25	47	104	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	9e-25	47	104	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010526995.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010526987.1	0.0	PREDICTED: myb family transcription factor PHL7-like
Refseq	XP_010526995.1	0.0	PREDICTED: myb family transcription factor PHL7-like
Swissprot	Q9SJW0	1e-131	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	D7LQZ5	1e-129	D7LQZ5_ARALL; Myb family transcription factor
STRING	XP_010526987.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	1e-109	G2-like family protein