PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010526615.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family WRKY
Protein Properties Length: 193aa    MW: 22084.4 Da    PI: 6.3953
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010526615.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.38.9e-30102159158
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                     ldDgy+WrKYG+K+++gs++pr+Y+rC+ ++C vkkk+er+  dp++v +tYeg+Hnh
  XP_010526615.1 102 LDDGYKWRKYGKKPIRGSPYPRHYHRCSNPNCVVKKKIERDIGDPDYVLTTYEGKHNH 159
                     59******************************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.8E-2994162IPR003657WRKY domain
SuperFamilySSF1182903.53E-2697162IPR003657WRKY domain
PROSITE profilePS5081129.74697162IPR003657WRKY domain
SMARTSM007742.4E-31102161IPR003657WRKY domain
PfamPF031062.6E-21103159IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MNFPSNPNPS FTELDFHLDF YSVSDILLMM EDDESNREGS PSSTWSANSS EKVTPDGTSP  60
PTSVATSFVS HDIGEREERK KRRQGNAPIH VFRTKSIDED MLDDGYKWRK YGKKPIRGSP  120
YPRHYHRCSN PNCVVKKKIE RDIGDPDYVL TTYEGKHNHG SPSVVYCEPD EIEFMSRNGW  180
CFQNNSNLSR SAP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-241001631578Probable WRKY transcription factor 4
2lex_A1e-241001631578Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00270DAPTransfer from AT2G21900Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010526615.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010526615.11e-143PREDICTED: probable WRKY transcription factor 59
SwissprotQ9SJ091e-56WRK59_ARATH; Probable WRKY transcription factor 59
TrEMBLA0A1J3F2781e-64A0A1J3F278_NOCCA; Putative WRKY transcription factor 59
STRINGXP_010526615.11e-143(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM138351726
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21900.16e-54WRKY DNA-binding protein 59