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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010526465.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | CPP | ||||||||
Protein Properties | Length: 605aa MW: 63977.5 Da PI: 8.2822 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 45.2 | 1.9e-14 | 129 | 169 | 1 | 42 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 ++kk+CnCk+s+Clk+YCeCfa+g++C+ C+C +C+N+ e+ XP_010526465.1 129 QKKKQCNCKHSRCLKLYCECFASGTYCDG-CNCANCFNNVEN 169 589**************************.********9875 PP | |||||||
2 | TCR | 50.9 | 3e-16 | 214 | 253 | 1 | 40 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k++kgC+Ckks ClkkYCeCf+a+ Cse+CkC dCkN e XP_010526465.1 214 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCLDCKNYE 253 589***********************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 1.9E-15 | 129 | 169 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 36.676 | 130 | 254 | IPR005172 | CRC domain |
Pfam | PF03638 | 1.4E-10 | 131 | 166 | IPR005172 | CRC domain |
SMART | SM01114 | 1.1E-19 | 214 | 255 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.8E-12 | 217 | 252 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 605 aa Download sequence Send to blast |
MGEGGDGSEF PPKKEQPEAS DFPAKKPARQ LDFTGGADAV LTEHSQSKAP APAPATAAAM 60 KTSTAPAASS TAARPAAAGI GQVRSTMPAV APMPPSVTQV LHTPVRLSKP ESPKSRARPA 120 VDARDGTPQK KKQCNCKHSR CLKLYCECFA SGTYCDGCNC ANCFNNVENE AARREAVEAT 180 LERNPTAFRP KIASSPHSAR DSGEEIGEVL MLGKHNKGCH CKKSGCLKKY CECFQANILC 240 SENCKCLDCK NYEGSEERQA LFHGEHANNV AYLQQAANAA ITGAVGSSGF ASSPGPKRRK 300 SQEIIFNQAT KDSSIHRFSH FQQANSGRAT GPTSCTSTVP ISRASGNASS VPSKFVYRSL 360 LADIIQPQDV KALCSVLVAV AGEAAKTLAD QRNETEKRME DQPETSLASS AAQNGGQGNK 420 GVKVEKVETG DGSSGSQVDK ARGEDSNSDG TNASKGRPLS PATLALMCDE QDTMFMVTAS 480 PNVSVDPGSH RTTSQLPNGQ GLSEIYAEQE RIVLTKFRDC LNRLISYGEL KESNCSSLAR 540 THLDSPAAVK TEAGIHQGPI PNGVSRTTTQ STAKSTSTQL TAASIPNPSN THLHKPPVLS 600 EKKDL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 2e-30 | 131 | 263 | 11 | 132 | Protein lin-54 homolog |
5fd3_B | 2e-30 | 131 | 263 | 11 | 132 | Protein lin-54 homolog |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a role in development of both male and female reproductive tissues. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00045 | PBM | Transfer from AT4G29000 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010526465.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010526465.1 | 0.0 | PREDICTED: protein tesmin/TSO1-like CXC 5 | ||||
Swissprot | Q9SZD1 | 0.0 | TCX5_ARATH; Protein tesmin/TSO1-like CXC 5 | ||||
TrEMBL | V4MD10 | 0.0 | V4MD10_EUTSA; Uncharacterized protein | ||||
STRING | XP_010526465.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1783 | 28 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29000.1 | 0.0 | Tesmin/TSO1-like CXC domain-containing protein |