PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010526424.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C3H
Protein Properties Length: 341aa    MW: 38393.1 Da    PI: 8.262
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010526424.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.22.5e-07125144626
                     -SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                     C++f++ G C+ Gd+C FaHg
  XP_010526424.1 125 CPDFRK-GGCRKGDSCEFAHG 144
                     ******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.3E-4119145IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.122120146IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-5125146IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-5125144IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.812154178IPR000571Zinc finger, CCCH-type
SMARTSM003560.22154177IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MMIGETHRPH PRVHVHPWPI PEDHVAAEMY SPAIGNSGGN VLEALRALQR YLPSNELSPE  60
SDTDFPGPDS PVDVYSCDHF RMYEFKVRPC AHGRNHDWTE CPYAHPGEKA RRRDPRKYHY  120
SGMACPDFRK GGCRKGDSCE FAHGVFECWL HPDRYRTQPC KDSGNCRRRV CFFAHSLDHL  180
RIVPQQSPDR VDSFDGSSSP PIRHSCSRAF QFSLSPASSS PSVSPRADSE STQLLSRSSG  240
SSSVNDVVAS LRNLQLNKVK SLPSSWNTQV RCYPSGLGSP RDPVVGLGFW SLPTTPTRPG  300
IGYMDKWNKG MTEEPAMERV ESGRELRAKM FERLSKENCM I
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010526424.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010526424.10.0PREDICTED: zinc finger CCCH domain-containing protein 20-like
SwissprotQ9M0G21e-157C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLA0A3P6EV561e-177A0A3P6EV56_BRAOL; Uncharacterized protein
TrEMBLV4P4C31e-177V4P4C3_EUTSA; Uncharacterized protein
STRINGXP_010526424.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12492788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-136C3H family protein
Publications ? help Back to Top
  1. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]