PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010526421.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family NAC
Protein Properties Length: 472aa    MW: 52396 Da    PI: 7.1267
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010526421.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM111.96.8e-35451881128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee.vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.........t 78 
                     lp+G++F+Ptd+el+ e+L +kv +k+      ++++  +i+   +i++++P++Lp  v+ +  + +fF++ +k+y+tg+rk+r+          
  XP_010526421.1  45 LPAGVKFDPTDQELI-EHLGAKVLAKDtkshplIDEFIpTIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKiqnecdiqgS 137
                     799************.999999999995665443332333666646**********.555666799******************86777776555 PP

             NAM  79 ksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                      + +W++tgk+++v+  +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  XP_010526421.1 138 GETRWHKTGKTRPVMI-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 188
                     5778************.999***********5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-3841207IPR003441NAC domain
PROSITE profilePS5100533.31645207IPR003441NAC domain
PfamPF023651.4E-1546188IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MNKSNPGPVT GSDLDAKIEE HQLCGSKKCP SCGHKLDGKP DWVGLPAGVK FDPTDQELIE  60
HLGAKVLAKD TKSHPLIDEF IPTIEGEDGI CYTHPEKLPG VTRDGLSRHF FHRPSKAYTT  120
GTRKRRKIQN ECDIQGSGET RWHKTGKTRP VMINGKQKGC KKILVLYTNF GKNRKPEKTN  180
WVMHQYHLGT HEEEREGELV VSKIFYQTQP RQCNWSSEKS LNVAGEGSST EHAGATAIRR  240
DHSGTSGSCS SREVVTVNPQ MGRSAEIATP HHVATAAAGL PSYSMDQLGF VPFRKSFDEV  300
GREAPTHATC DDVPEQHHHH HHHGSSSSSS HHIAHDHHQH QHRHQVVASA AAAFHISQPT  360
HPVVSTIISP SSSLHHTSIN IVEESPYHIP RILLSNETFQ TQEEHDQQQH HGKMGGRSTS  420
GLEELIMGCS SSASHHHVKD QDSSMETPQE AEWLKYSSFW PAPDSDNQDH HG
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00460DAPTransfer from AT4G29230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010526421.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010526421.10.0PREDICTED: uncharacterized protein LOC104803997 isoform X1
SwissprotQ9M0F80.0NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A1P8B8V60.0A0A1P8B8V6_ARATH; NAC domain containing protein 75
STRINGXP_010526421.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66352643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-164NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]