PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

ERF

Protein Properties

Length: 262aa MW: 28566 Da PI: 4.9879

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010526108.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	59	1.2e-18	42	92	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr ++ +g+Wv+eIr+p++ + r++lg+f tae+Aa+a++ a+ +++g XP_010526108.1 42 PVYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDVAAMSIKG 92 68***998.******843...6********************99887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	6.5E-13	42	92	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	3.4E-32	43	101	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	3.33E-21	43	100	IPR016177	DNA-binding domain
PROSITE profile	PS51032	23.393	43	100	IPR001471	AP2/ERF domain
SMART	SM00380	2.5E-37	43	106	IPR001471	AP2/ERF domain
PRINTS	PR00367	9.7E-11	44	55	IPR001471	AP2/ERF domain
CDD	cd00018	6.10E-33	44	102	No hit	No description
PRINTS	PR00367	9.7E-11	66	82	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MVESTHQGSD IECSTTNLSP PFPSPSPGEK RKRVIGSPVK HPVYRGVRMR SWGKWVSEIR 60 EPRKKSRIWL GTFPTAEMAA RAHDVAAMSI KGSSAILNFP ELSGSFPRPV SLSPKDIQAA 120 SAKAALIDPK TTPLHSQAKT TPLQPKDKTT AFDLRDQTMP CQATSETSET TSWSSASTLT 180 SSFSDVDLSD ITVPDELGEI VELPSLGTSL GELRSEFMLF DSLDSDGWVY TSPLLNSMED 240 LTYGNASLFG PVSAEESFSW NY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	4e-20	36	101	7	73	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00467	DAP	Transfer from AT4G32800	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010526108.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010526108.1	0.0	PREDICTED: ethylene-responsive transcription factor ERF043
Swissprot	Q9M080	2e-62	ERF43_ARATH; Ethylene-responsive transcription factor ERF043
TrEMBL	A0A0D3BLR5	1e-68	A0A0D3BLR5_BRAOL; Uncharacterized protein
STRING	XP_010526108.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM185	28	283

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32800.1	1e-62	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]