PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010526102.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family HD-ZIP
Protein Properties Length: 827aa    MW: 90863 Da    PI: 5.6799
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010526102.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.89.1e-191270357
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    k  ++t+eq+e+Le+l++ +++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  XP_010526102.1 12 KYVRYTPEQVEALERLYNDCPKPSSMRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 70
                    5679*****************************************************97 PP
2START1901.2e-591563642205
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W +++++ ++++v+s++  g+++l+
  XP_010526102.1 156 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCSGIAARACGLVGLDPT-RVAEILKDRPSWLRDCRSLDIINVLSTAngGTIELI 249
                     789*******************************************************.8888888888*****************999****** PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                     +++l+a+++l+p Rdf++ Ry+  +++g++vi+++S++++q+ p+   s+++vRae lpSg+li+p+++g+s +++v+h dl+ ++++++lrsl+
  XP_010526102.1 250 YMQLYAPTTLAPaRDFWMMRYTSVMEDGSLVICERSLNNTQNGPSmppSPHFVRAEILPSGYLIRPCEGGGSILHVVDHLDLEPWSVPEVLRSLY 344
                     *******************************************99999*********************************************** PP

                     HHHHHHHHHHHHHHTXXXXX CS
           START 186 ksglaegaktwvatlqrqce 205
                     +s++  +++t++a+l+++++
  XP_010526102.1 345 ESSALLAQRTTMAALRYLRQ 364
                     ***************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.71771IPR001356Homeobox domain
SMARTSM003891.7E-15975IPR001356Homeobox domain
SuperFamilySSF466896.42E-171075IPR009057Homeodomain-like
CDDcd000861.18E-161272No hitNo description
PfamPF000462.7E-161370IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.4E-181470IPR009057Homeodomain-like
CDDcd146861.13E-664103No hitNo description
PROSITE profilePS5084826.98146374IPR002913START domain
CDDcd088755.66E-80150365No hitNo description
Gene3DG3DSA:3.30.530.201.4E-24155360IPR023393START-like domain
SuperFamilySSF559611.65E-38155366No hitNo description
SMARTSM002348.3E-45155365IPR002913START domain
PfamPF018522.0E-57156364IPR002913START domain
PfamPF086701.1E-49687826IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010067Biological Processprocambium histogenesis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0010089Biological Processxylem development
GO:0045597Biological Processpositive regulation of cell differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 827 aa     Download sequence    Send to blast
MGGGSNSMDN GKYVRYTPEQ VEALERLYND CPKPSSMRRQ QLIRECPILS NIEPKQIKVW  60
FQNRRCREKQ RKEASRLQAV NRKLTAMNKL LMEENDRLQK QVSQLVYENS YFRQHTQNAN  120
LATTDTSCES VVTSGQHHLT PQHPPRDASP AGLLSIAEET LTEFLSKATG TAVEWVQMPG  180
MKPGPDSIGI VAISHGCSGI AARACGLVGL DPTRVAEILK DRPSWLRDCR SLDIINVLST  240
ANGGTIELIY MQLYAPTTLA PARDFWMMRY TSVMEDGSLV ICERSLNNTQ NGPSMPPSPH  300
FVRAEILPSG YLIRPCEGGG SILHVVDHLD LEPWSVPEVL RSLYESSALL AQRTTMAALR  360
YLRQISQEIS QPNVTGWGRR PAALRALSQR LSKGFNEAVN GFSDEGWSMI ESDGIDDVTV  420
LVNSSPGKMM SSNLPFSNGG FQSMPNAVLC AKASMLLQNV PPAILLRFLR EHRQEWADNS  480
IDVYSAAAIR AGPCSIPIPR PGSFGGQVIL PLAQTIENEE FMEVIKLEGL GHYQDDMIMP  540
ADIFLLQMCN GVDENAIGTC AELIFAPIDA SFSDDAPIIP SGFRIIPVDS KSEGSSPNRT  600
LDLASALEVG GPGNRGAGDS CGTRGSTKSV MTIAFQLAFE VHLQDSIASM ARQYVRSVIA  660
SVQRVALALS PSHLGLPAPP ASPEALTLSR WICQSYRCYL GVELLKTQGT DILKSLWNHT  720
DAIMCCSLKA LPVFTFANQA GLDMLETTLV ALQDITLEKI FDDSGRKTLC SEFPQVMQQG  780
FMCLQGGICM SSMGRPVTYE KAVAWKVLND DEEPHCISFV FVNWSFI
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of vascular development. May promote differentiation of precambial and cambial cells. {ECO:0000269|PubMed:11402194, ECO:0000269|PubMed:15598805}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010526102.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165. {ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:8575317}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010526102.10.0PREDICTED: homeobox-leucine zipper protein ATHB-8
RefseqXP_010526103.10.0PREDICTED: homeobox-leucine zipper protein ATHB-8
SwissprotQ391230.0ATHB8_ARATH; Homeobox-leucine zipper protein ATHB-8
TrEMBLV4P3880.0V4P388_EUTSA; Uncharacterized protein
STRINGXP_010526102.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20222678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32880.10.0homeobox gene 8
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Hategan L,Godza B,Kozma-Bognar L,Bishop GJ,Szekeres M
    Differential expression of the brassinosteroid receptor-encoding BRI1 gene in Arabidopsis.
    Planta, 2014. 239(5): p. 989-1001
    [PMID:24488524]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Kakehi J, et al.
    Mutations in ribosomal proteins, RPL4 and RACK1, suppress the phenotype of a thermospermine-deficient mutant of Arabidopsis thaliana.
    PLoS ONE, 2015. 10(1): p. e0117309
    [PMID:25625317]
  5. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  6. Liu S, et al.
    Expression of wild-type PtrIAA14.1, a poplar Aux/IAA gene causes morphological changes in Arabidopsis.
    Front Plant Sci, 2015. 6: p. 388
    [PMID:26082787]
  7. Yamaguchi YL, et al.
    Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots.
    Front Plant Sci, 2017. 8: p. 1195
    [PMID:28747918]
  8. Yamazaki K, et al.
    Suppression of DELLA signaling induces procambial cell formation in culture.
    Plant J., 2018. 94(1): p. 48-59
    [PMID:29383774]