PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010526073.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C3H
Protein Properties Length: 350aa    MW: 38637.3 Da    PI: 7.5796
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010526073.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.16.1e-08128148526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C+ f++ G C+ Gd+C FaHg
  XP_010526073.1 128 ACPEFRK-GSCRKGDSCEFAHG 148
                     7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.1E-5123149IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.281124150IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-5127150IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-6128148IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.23158182IPR000571Zinc finger, CCCH-type
SMARTSM0035620158181IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0061157Biological ProcessmRNA destabilization
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003727Molecular Functionsingle-stranded RNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MIIGERSRSH PTVQIPSWDP PTDPTVTLSS VNFNGVGDYP LSPSPYLDSI ASLYRYLPSN  60
EFAADSDSLS GDESGADAFA CDDFRMYEFK VRRCSRSRSH DWTECPFAHP GEKARRRDPR  120
KYHYSGTACP EFRKGSCRKG DSCEFAHGVF ECWLHPARYR TQPCKDGTSC QRRVCFFAHT  180
PEQLRVLSGS GESDLGLCVR NRFESHFSKS VIASSPTSIL VSPPISPPSD SPTMSSNSDG  240
LIPYMRKMRL SGGSWGSPVG SGFGSRGCAV LRPGFCSTPT TPTRARTWLG LGEIDAWDAA  300
CEEGRAMELV ESGKELRARM YAKLSKENSL GRVDLAVPGP DIEWVSELFK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010526073.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010526073.10.0PREDICTED: zinc finger CCCH domain-containing protein 23
SwissprotO823071e-125C3H23_ARATH; Zinc finger CCCH domain-containing protein 23
TrEMBLA0A1J3FL651e-152A0A1J3FL65_NOCCA; Zinc finger CCCH domain-containing protein 23 (Fragment)
STRINGXP_010526073.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12492788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25900.21e-115C3H family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]