PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010526064.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family TALE
Protein Properties Length: 529aa    MW: 58550.1 Da    PI: 6.1295
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010526064.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.32.6e-084514891854
                     HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     +F++  ++yp+ +e+  LA k gLt +qV++WF N R +
  XP_010526064.1 451 MFQNflHPYPKDSEKYLLAIKSGLTRSQVSNWFINARVR 489
                     5887779******************************88 PP
2BELL82.45.7e-27320390172
            BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     +r++l++kka+Ll+ll+ Vd+rY++++++ +tv+s+F a+++l++ +++t++Al+++S+ +++L+++i++qi
  XP_010526064.1 320 QRRALEAKKAQLLNLLQVVDDRYSHCMDEFHTVVSAFYAATELDP-QLHTRFALQTVSFLYKNLRERISNQI 390
                     6899*****************************************.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.8E-35243388IPR006563POX domain
PfamPF075265.2E-26249387IPR006563POX domain
PROSITE profilePS5007111.013430493IPR001356Homeobox domain
SMARTSM003894.6E-6433497IPR001356Homeobox domain
CDDcd000865.38E-11433494No hitNo description
SuperFamilySSF466891.84E-15434502IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-25436499IPR009057Homeodomain-like
PfamPF059205.7E-14450489IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009640Biological Processphotomorphogenesis
GO:0010073Biological Processmeristem maintenance
GO:0010227Biological Processfloral organ abscission
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0090470Biological Processshoot organ boundary specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MENNSNNTFS SPANVSNQNA ILMDGFTSQM SLNPPLMDQN YSGFARDSAT FSTFFPWSPL  60
QMCGSEVVNS LLSNAFSASR AYDLQENCDN LGVTAPQLHP LRPFAYEDSS NNMNSSLLTP  120
GDCRYRDGFI VRDNDKWGLE AKSGFQAYTC ADGVGPSSQI SPVGENLAAH FPFPVSETRN  180
ELSLSLATSN RSIIGGTNVS DQSSEISLCP AATAAAATAK RLSSEQASCS SSSKDLSLSF  240
PSNVTTGLIV GSRYLQAVQE ILAQFASFSL ESSETSSGYS VRGTESGPNP TFLSGLWNLT  300
AEFLDGDYNN SESVSSPALQ RRALEAKKAQ LLNLLQVVDD RYSHCMDEFH TVVSAFYAAT  360
ELDPQLHTRF ALQTVSFLYK NLRERISNQI LAMGSVLENS GSRGKEKARE DAFREPDSAA  420
ALLRFDRKNH QLWRPQRGLP EKSVSVLRAW MFQNFLHPYP KDSEKYLLAI KSGLTRSQVS  480
NWFINARVRL WKPMIEEMYA EMNRRNGNCD DDGSRRRQPA GDTLHRRFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A8e-15439497563Homeobox protein Meis2
4xrm_B8e-15439497563Homeobox protein Meis2
4xrs_A8e-15439496158Homeobox protein Meis1
4xrs_B8e-15439496158Homeobox protein Meis1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:17908157}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010526064.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010526064.10.0PREDICTED: homeobox protein ATH1
SwissprotP487311e-157ATH1_ARATH; Homeobox protein ATH1
TrEMBLA0A178V1Z51e-159A0A178V1Z5_ARATH; ATH1
STRINGXP_010526064.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82282637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.11e-144homeobox gene 1
Publications ? help Back to Top
  1. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]