PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010525977.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C2H2
Protein Properties Length: 453aa    MW: 50000.4 Da    PI: 7.3024
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010525977.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.0001792109219
                     EETTTTEEESSHHHHHHH CS
         zf-C2H2   2 kCpdCgksFsrksnLkrH 19 
                     +C++Cgk Fs++ ++  H
  XP_010525977.1  92 VCENCGKEFSSWKSFLEH 109
                     6**************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.582244IPR007087Zinc finger, C2H2
PfamPF139129.1E-42244IPR007087Zinc finger, C2H2
SMARTSM003553.32244IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002802444IPR007087Zinc finger, C2H2
SMARTSM0035518091111IPR015880Zinc finger, C2H2-like
SuperFamilySSF576679.72E-5235264No hitNo description
PROSITE profilePS5015710.076238265IPR007087Zinc finger, C2H2
PfamPF139126.5E-10238262IPR007087Zinc finger, C2H2
SMARTSM003550.13238260IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280240260IPR007087Zinc finger, C2H2
SuperFamilySSF576673.44E-5316342No hitNo description
PfamPF139122.4E-13318342IPR007087Zinc finger, C2H2
PROSITE profilePS501579.369319341IPR007087Zinc finger, C2H2
SMARTSM003550.44319341IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280321341IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MALVVGQQHQ QQQGTQQQQH KHHCRICKKG FGCGRALGGH MRAHGISDDS ALVDEDEDDN  60
TSDWEGGDVV PSENKRMYAL RTNPNRLKSC RVCENCGKEF SSWKSFLEHG KCASDDAESL  120
VSSPASYDIE DGLPTRGYGH NWSKRKRSFR AKVGNVFSTN CPSTEEEYLA HCLMMLSNGT  180
VDPFVLPEPE ESCASASRDE DRRQSLNYMA SINNPYSHSY KTPTLSEKPR VVASKGIFEC  240
KACKKVFNSH QALGGHRASH KKVKGCFAAK TDHTDVVIGD RDHGIMSAQN EFFQMKSHST  300
FRSDHEGGSS SSKKKGKVHE CSICHRVFSS GQALGGHKRC HWITSNNSSD HAASASFAKF  360
DLNFPAPPDD KSDLKNRVSR DILLLPWLGV DGNRNEGDNI MEDTSKIMSD DETDVKAKFA  420
KLSELKDVST SESSSQWLQV GIGSTSNQIA GDS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010525977.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010525977.10.0PREDICTED: zinc finger protein ZAT4-like
TrEMBLA0A2H5NP131e-171A0A2H5NP13_CITUN; Uncharacterized protein
STRINGXP_010525977.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13535616
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.15e-30C2H2-like zinc finger protein