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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010525329.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 262aa MW: 30422.3 Da PI: 9.5548 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 97.1 | 7.2e-31 | 37 | 86 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLC+aeva+iifss+g+lyey+ XP_010525329.1 37 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCEAEVALIIFSSRGRLYEYA 86 79***********************************************8 PP | |||||||
2 | K-box | 93.5 | 3.5e-31 | 108 | 198 | 7 | 97 |
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 s++e +++++qqe++kL+++i+ +q+ +R++lGe+L+sL++k+L++Le++Lek++ +iRskKnelll++ie++qk+ l ++ ++L+++ XP_010525329.1 108 PSVNEINTQYYQQEASKLRRQIRDIQNMNRNILGESLGSLNFKDLKNLESRLEKGIARIRSKKNELLLSEIEYMQKRVTFLPSQGNELQSE 198 4488999**********************************************************************98776666666654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 33.319 | 29 | 89 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.6E-40 | 29 | 88 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 9.26E-44 | 30 | 103 | No hit | No description |
SuperFamily | SSF55455 | 2.62E-32 | 30 | 103 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-32 | 31 | 51 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 31 | 85 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.1E-25 | 38 | 85 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-32 | 51 | 66 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-32 | 66 | 87 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 7.0E-23 | 114 | 198 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.16 | 115 | 212 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0090376 | Biological Process | seed trichome differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MQQLSVGDKV MNMEMAKNEA ESSNNTKKIG RGKIEIKRIE NTTNRQVTFC KRRNGLLKKA 60 YELSVLCEAE VALIIFSSRG RLYEYANSSV RGTIERYKKA SSDAVNPPSV NEINTQYYQQ 120 EASKLRRQIR DIQNMNRNIL GESLGSLNFK DLKNLESRLE KGIARIRSKK NELLLSEIEY 180 MQKRVTFLPS QGNELQSETF FLREKIAENE RFQQEQEQQQ QQQGAVYESH ESQQYNRSYI 240 PVNLLEPNQQ FSGQDQPPLQ LV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 4e-20 | 29 | 101 | 1 | 73 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 4e-20 | 29 | 101 | 1 | 73 | Myocyte-specific enhancer factor 2B |
1tqe_R | 4e-20 | 29 | 101 | 1 | 73 | Myocyte-specific enhancer factor 2B |
1tqe_S | 4e-20 | 29 | 101 | 1 | 73 | Myocyte-specific enhancer factor 2B |
5f28_A | 6e-20 | 29 | 97 | 1 | 69 | MEF2C |
5f28_B | 6e-20 | 29 | 97 | 1 | 69 | MEF2C |
5f28_C | 6e-20 | 29 | 97 | 1 | 69 | MEF2C |
5f28_D | 6e-20 | 29 | 97 | 1 | 69 | MEF2C |
6byy_A | 5e-20 | 29 | 101 | 1 | 73 | MEF2 CHIMERA |
6byy_B | 5e-20 | 29 | 101 | 1 | 73 | MEF2 CHIMERA |
6byy_C | 5e-20 | 29 | 101 | 1 | 73 | MEF2 CHIMERA |
6byy_D | 5e-20 | 29 | 101 | 1 | 73 | MEF2 CHIMERA |
6c9l_A | 4e-20 | 29 | 101 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_B | 4e-20 | 29 | 101 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_C | 4e-20 | 29 | 101 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_D | 4e-20 | 29 | 101 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_E | 4e-20 | 29 | 101 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_F | 4e-20 | 29 | 101 | 1 | 73 | Myocyte-specific enhancer factor 2B |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Interacts genetically with TT16/AGL32 in a partially antagonistic manner during flower development. Is essential for the coordination of cell divisions in ovule, seed coat development and endosperm formation (PubMed:27776173). {ECO:0000269|PubMed:27776173}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010525329.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010525329.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL1 isoform X1 | ||||
Swissprot | P29381 | 1e-130 | AGL1_ARATH; Agamous-like MADS-box protein AGL1 | ||||
TrEMBL | R0HTN5 | 1e-129 | R0HTN5_9BRAS; Uncharacterized protein | ||||
STRING | XP_010525329.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3341 | 23 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58780.1 | 1e-118 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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