PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010525308.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C2H2
Protein Properties Length: 374aa    MW: 41547.1 Da    PI: 8.1506
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010525308.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.00165880223
                    EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2  2 kCpdCgksFsrksnLkrHirt.H 23
                    +C+ Cgk F+    L++H    H
  XP_010525308.1 58 RCKECGKGFRYDKCLTNHRAWmH 80
                    7*****************97766 PP
2zf-C2H2120.00063262284123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C  C+k+Fs+   L  H+ +H
  XP_010525308.1 262 HRCRTCDKTFSSYQALGGHQTLH 284
                     79**************9999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.655780IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.035785IPR007087Zinc finger, C2H2
PROSITE patternPS0002805980IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.0E-45976IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.55E-5261286No hitNo description
PROSITE profilePS5015710.076262289IPR007087Zinc finger, C2H2
PfamPF139122.1E-8262285IPR007087Zinc finger, C2H2
SMARTSM003550.1262284IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280264284IPR007087Zinc finger, C2H2
PfamPF139125.3E-7312335IPR007087Zinc finger, C2H2
SMARTSM003550.74312334IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.224312339IPR007087Zinc finger, C2H2
PROSITE patternPS000280314335IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MKTHFPSGAS DEKESPNRDL SCYYGLRENP KKTQKFAGSN SSEASMDHHS GTRKNLVRCK  60
ECGKGFRYDK CLTNHRAWMH SGSQSASEES RASLCGFSLV RRKRSRVNRY KKTRLSSFIT  120
FPEYLSVSAT EEELQVVECL ILLSESGGNV LDGLKLVGEA LEAHSETPGT QDSWSCLSSK  180
KPRTSGEFDH DETCKDKNTG QGSESEKGSR DNHQKNLGEE EESKRIMCLD DDAEEPGKSS  240
PQVAGSSPVL APCSDERRSF EHRCRTCDKT FSSYQALGGH QTLHRMRNKA GSGQKTERRR  300
ETGEPNGSSV EHKCIICSRV FKSVHALGGH KKCHHLRKSS KVGDSRNLTE EETYFGSNNG  360
IDLNVPIACA VEQV
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010525308.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010525308.10.0PREDICTED: zinc finger protein ZAT9
TrEMBLV4N7C84e-66V4N7C8_EUTSA; Uncharacterized protein
STRINGXP_010525308.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM75191630
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15480.18e-38C2H2 family protein