PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010525224.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | HSF | ||||||||
Protein Properties | Length: 379aa MW: 43643.5 Da PI: 4.9116 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 114.2 | 8.3e-36 | 60 | 151 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k+y+i+ed+++++++sws+++nsfvv+d++ fa ++Lp++Fkhsnf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+k+ll++ XP_010525224.1 60 FLTKTYDIVEDSRTNHIVSWSKHSNSFVVWDPQAFAMSLLPRHFKHSNFSSFVRQLNTYGFRKVNPDR---------WEFANEGFLRGQKHLLKS 145 9****************************************************************999.........****************** PP XXXXXX CS HSF_DNA-bind 97 ikrkks 102 i+r+k XP_010525224.1 146 IRRRKC 151 ***986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 8.5E-39 | 53 | 144 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 3.08E-35 | 55 | 149 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 2.0E-58 | 56 | 149 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.8E-18 | 60 | 83 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.5E-31 | 60 | 149 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.8E-18 | 98 | 110 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 99 | 123 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.8E-18 | 111 | 123 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 379 aa Download sequence Send to blast |
MDPSYRAIKE EFPGINNSSS SSSSSSSPYS SSTFIYSTMA ANSSSPQPME GLRESGPPPF 60 LTKTYDIVED SRTNHIVSWS KHSNSFVVWD PQAFAMSLLP RHFKHSNFSS FVRQLNTYGF 120 RKVNPDRWEF ANEGFLRGQK HLLKSIRRRK CNNQQQTPQQ QSLDSCVEVG RFGLDGEIDR 180 LRRDKQALMM ELVRLRQQQQ NTKSYLTLME EKLKKTETKQ QQMMSFLARA MQNPEFVQQL 240 VHQKDKRKEL EEAINKKRRR PIDRGTSNVI DVVGDGDNDH GHADAYLDDI KQETYQDMSE 300 FGVLELDRLA MDIQGHGDNT KEECCVNVEE EEEEDEGFWE DLLNEYHINI QEDLGILGGE 360 EENVDDLVEQ LGCLGSIPR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 6e-23 | 51 | 149 | 17 | 129 | Heat shock factor protein 1 |
5d5v_B | 6e-23 | 51 | 149 | 17 | 129 | Heat shock factor protein 1 |
5d5v_D | 6e-23 | 51 | 149 | 17 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 245 | 259 | KRKELEEAINKKRRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00371 | DAP | Transfer from AT3G22830 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010525224.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010525224.1 | 0.0 | PREDICTED: heat stress transcription factor A-6b | ||||
Swissprot | Q9LUH8 | 1e-159 | HFA6B_ARATH; Heat stress transcription factor A-6b | ||||
TrEMBL | V4LYI1 | 1e-163 | V4LYI1_EUTSA; Uncharacterized protein | ||||
STRING | XP_010525224.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1256 | 28 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22830.1 | 1e-133 | heat shock transcription factor A6B |