PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010525082.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C3H
Protein Properties Length: 429aa    MW: 47126 Da    PI: 8.4233
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010525082.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.53.4e-113662127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                    ++++ C+++ rtG C++G++C+F+H++
  XP_010525082.1 36 PGEPDCSYYIRTGLCRFGSTCRFNHPR 62
                    5789*********************96 PP
2zf-CCCH38.12.5e-1283107327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C+++++tGtCk+G +CkF+H++
  XP_010525082.1  83 QPECQYYLKTGTCKFGVTCKFHHPR 107
                     799********************96 PP
3zf-CCCH406.7e-13129153327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C++++rtG+Ck+G++CkF+H+p
  XP_010525082.1 129 EVECSYYLRTGHCKFGSTCKFNHPP 153
                     689********************97 PP
4zf-CCCH38.71.7e-12282308127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +++++C+f+++tG Ck+G+ CkF+H++
  XP_010525082.1 282 PGQPECQFYMKTGDCKFGAVCKFHHPR 308
                     5789*********************96 PP
5zf-CCCH38.12.5e-12328354127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++lC f++r+G+Ck+G++CkF H++
  XP_010525082.1 328 PGEPLCVFYSRYGICKFGPSCKFDHPM 354
                     589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.6993563IPR000571Zinc finger, CCCH-type
SMARTSM003567.0E-53562IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-73762IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.01E-54063IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-44162IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.39980108IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-580107IPR000571Zinc finger, CCCH-type
PfamPF006429.2E-1083107IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-684109IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-486107IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-6126153IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.901126154IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-6127154IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-10129153IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4132151IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.418281309IPR000571Zinc finger, CCCH-type
SMARTSM003566.3E-6281308IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-9283308IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5285310IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-4287309IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.234327355IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-7327354IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-9329354IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5330354IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.7E-4332352IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MDFNAGVPMS RESDAMWPMN LSSVETMEGG TYPERPGEPD CSYYIRTGLC RFGSTCRFNH  60
PRDRNLAIAA ARMKGEYPER IGQPECQYYL KTGTCKFGVT CKFHHPRNKA GIAGRVSLNV  120
LGYPIRPNEV ECSYYLRTGH CKFGSTCKFN HPPPTNLMVP LRGSPVYPAV QSPTAGQQSY  180
SWSRASFIAN PRWQDPSSFA SLILPQGMVS VQGWNTYSGQ LGSVSSSGSP QQVTGNDHNY  240
GNLMQNEAKD TGSPGSFSGF HSGSAQLGIY ALPRENVFPE RPGQPECQFY MKTGDCKFGA  300
VCKFHHPRDR QIPPPDCVLS PIGLPLRPGE PLCVFYSRYG ICKFGPSCKF DHPMRVFTYN  360
NINNASSSMN QETPFRHLLG SSSSGGAASI SLSSEELVET SAAKPRRLSV SETRQAPSGK  420
DTIAIDTEQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010525082.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010525082.10.0PREDICTED: zinc finger CCCH domain-containing protein 33-like isoform X2
SwissprotQ8GXX70.0C3H33_ARATH; Zinc finger CCCH domain-containing protein 33
TrEMBLA0A2K1Y3460.0A0A2K1Y346_POPTR; Uncharacterized protein
STRINGXP_010525081.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.10.0zinc finger protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]