PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010525081.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C3H
Protein Properties Length: 440aa    MW: 48224.2 Da    PI: 8.4233
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010525081.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.53.5e-114773127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                    ++++ C+++ rtG C++G++C+F+H++
  XP_010525081.1 47 PGEPDCSYYIRTGLCRFGSTCRFNHPR 73
                    5789*********************96 PP
2zf-CCCH38.12.6e-1294118327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C+++++tGtCk+G +CkF+H++
  XP_010525081.1  94 QPECQYYLKTGTCKFGVTCKFHHPR 118
                     799********************96 PP
3zf-CCCH39.96.9e-13140164327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C++++rtG+Ck+G++CkF+H+p
  XP_010525081.1 140 EVECSYYLRTGHCKFGSTCKFNHPP 164
                     689********************97 PP
4zf-CCCH38.61.7e-12293319127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +++++C+f+++tG Ck+G+ CkF+H++
  XP_010525081.1 293 PGQPECQFYMKTGDCKFGAVCKFHHPR 319
                     5789*********************96 PP
5zf-CCCH38.12.6e-12339365127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++lC f++r+G+Ck+G++CkF H++
  XP_010525081.1 339 PGEPLCVFYSRYGICKFGPSCKFDHPM 365
                     589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003567.0E-54673IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.6994674IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-74873IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.03E-55174IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-45273IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-591118IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.39991119IPR000571Zinc finger, CCCH-type
PfamPF006429.5E-1094118IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-695120IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-497118IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-6137164IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.901137165IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-6138165IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-10140164IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4143162IPR000571Zinc finger, CCCH-type
SMARTSM003566.3E-6292319IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.418292320IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-9294319IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5296321IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-4298320IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-7338365IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.234338366IPR000571Zinc finger, CCCH-type
PfamPF006424.8E-9340365IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5341365IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.9E-4343363IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MDFNAGVPMS RESGTSSLSP LLNQDAMWPM NLSSVETMEG GTYPERPGEP DCSYYIRTGL  60
CRFGSTCRFN HPRDRNLAIA AARMKGEYPE RIGQPECQYY LKTGTCKFGV TCKFHHPRNK  120
AGIAGRVSLN VLGYPIRPNE VECSYYLRTG HCKFGSTCKF NHPPPTNLMV PLRGSPVYPA  180
VQSPTAGQQS YSWSRASFIA NPRWQDPSSF ASLILPQGMV SVQGWNTYSG QLGSVSSSGS  240
PQQVTGNDHN YGNLMQNEAK DTGSPGSFSG FHSGSAQLGI YALPRENVFP ERPGQPECQF  300
YMKTGDCKFG AVCKFHHPRD RQIPPPDCVL SPIGLPLRPG EPLCVFYSRY GICKFGPSCK  360
FDHPMRVFTY NNINNASSSM NQETPFRHLL GSSSSGGAAS ISLSSEELVE TSAAKPRRLS  420
VSETRQAPSG KDTIAIDTEQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010525081.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010525081.10.0PREDICTED: zinc finger CCCH domain-containing protein 33-like isoform X1
SwissprotQ8GXX70.0C3H33_ARATH; Zinc finger CCCH domain-containing protein 33
TrEMBLA0A2K1Y3460.0A0A2K1Y346_POPTR; Uncharacterized protein
TrEMBLM5VZ660.0M5VZ66_PRUPE; Uncharacterized protein
STRINGXP_010525081.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33892864
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.10.0zinc finger protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]