PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010525037.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

NAC

Protein Properties

Length: 482aa MW: 55882.4 Da PI: 5.701

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010525037.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	177	5.1e-55	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtdeel+++yLk+k++g++++l ++i+evd+yk+ePwdLp k + ++++ewyfFs+rd+ky++g+r+nratk gyWkatgkd++v XP_010525037.1 6 LPPGFRFHPTDEELITYYLKRKINGREIDL-DIIPEVDLYKCEPWDLPgKsLLPSKDQEWYFFSPRDRKYPNGSRTNRATKGGYWKATGKDRRVS 99 79**************************.99***********6345667999********************************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++++g+kktLv+y+grap+g +t W+mheyrl XP_010525037.1 100 W-RNRAIGTKKTLVYYRGRAPHGIRTGWIMHEYRL 133 9.8899*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.62E-62	3	157	IPR003441	NAC domain
PROSITE profile	PS51005	60.089	6	157	IPR003441	NAC domain
Pfam	PF02365	5.2E-29	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 482 aa Download sequence Send to blast
MAAVSLPPGF RFHPTDEELI TYYLKRKING REIDLDIIPE VDLYKCEPWD LPGKSLLPSK 60 DQEWYFFSPR DRKYPNGSRT NRATKGGYWK ATGKDRRVSW RNRAIGTKKT LVYYRGRAPH 120 GIRTGWIMHE YRLDETECEL SALGMLDAYA LCRVSKKIVI EGKPREMSSY VHTRAMIGDC 180 SSNLDVCSYP DSSTHQIQPY HQFGGGRDDD WARYLPQEAF PLPNHGSSYD PYPPLSKVNS 240 EIECAMLQHQ MSLPPLRIES SPQTNEYFKV NQNNDHGFED FTFATSNFNH YNNDPFIPVF 300 GNLDDGFNAE NSRWMRTPNN DTNHHDFVEE HKIMPNFEDN NEFDGESRCN AINSNIDIED 360 YLSFEIYHVK DEKQVGEVDA AINTNETLIS SSFEMVEEEI KVNHGMFIAT RQATETLFHQ 420 IVPSETLKVQ INALDDRLEE RRALSEDYSD SLFDKIKRSA KARLSKVHLI AHQYYMSIRV 480 FF

Sequence ? help Back to Top

Protein Sequence Length: 482 aa Download sequence Send to blast

MAAVSLPPGF RFHPTDEELI TYYLKRKING REIDLDIIPE VDLYKCEPWD LPGKSLLPSK  60
DQEWYFFSPR DRKYPNGSRT NRATKGGYWK ATGKDRRVSW RNRAIGTKKT LVYYRGRAPH  120
GIRTGWIMHE YRLDETECEL SALGMLDAYA LCRVSKKIVI EGKPREMSSY VHTRAMIGDC  180
SSNLDVCSYP DSSTHQIQPY HQFGGGRDDD WARYLPQEAF PLPNHGSSYD PYPPLSKVNS  240
EIECAMLQHQ MSLPPLRIES SPQTNEYFKV NQNNDHGFED FTFATSNFNH YNNDPFIPVF  300
GNLDDGFNAE NSRWMRTPNN DTNHHDFVEE HKIMPNFEDN NEFDGESRCN AINSNIDIED  360
YLSFEIYHVK DEKQVGEVDA AINTNETLIS SSFEMVEEEI KVNHGMFIAT RQATETLFHQ  420
IVPSETLKVQ INALDDRLEE RRALSEDYSD SLFDKIKRSA KARLSKVHLI AHQYYMSIRV  480
FF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-54	1	157	12	165	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-54	1	157	12	165	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-54	1	157	12	165	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-54	1	157	12	165	NO APICAL MERISTEM PROTEIN
3swm_A	6e-54	1	157	15	168	NAC domain-containing protein 19
3swm_B	6e-54	1	157	15	168	NAC domain-containing protein 19
3swm_C	6e-54	1	157	15	168	NAC domain-containing protein 19
3swm_D	6e-54	1	157	15	168	NAC domain-containing protein 19
3swp_A	6e-54	1	157	15	168	NAC domain-containing protein 19
3swp_B	6e-54	1	157	15	168	NAC domain-containing protein 19
3swp_C	6e-54	1	157	15	168	NAC domain-containing protein 19
3swp_D	6e-54	1	157	15	168	NAC domain-containing protein 19
3ulx_A	7e-54	2	157	11	168	Stress-induced transcription factor NAC1
4dul_A	6e-54	1	157	12	165	NAC domain-containing protein 19
4dul_B	6e-54	1	157	12	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC086, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010525037.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Regulated by the transcription factor APL (AC Q9SAK5). {ECO:0000269\|PubMed:25081480}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010525037.1	0.0	PREDICTED: NAC domain-containing protein 45-like
Swissprot	A4VCM0	0.0	NAC45_ARATH; NAC domain-containing protein 45
TrEMBL	V4N7S3	0.0	V4N7S3_EUTSA; Uncharacterized protein
STRING	XP_010525037.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4411	18	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03200.1	0.0	NAC domain containing protein 45

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]