PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010524968.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

G2-like

Protein Properties

Length: 323aa MW: 37040.2 Da PI: 6.5184

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010524968.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	34.3	5.2e-11	1	23	33	55
G2-like 33 lelmkvkgLtlehvkSHLQkYRl 55 +++m+v+gLtl+h+kSHLQkYRl XP_010524968.1 1 MKVMGVPGLTLYHLKSHLQKYRL 23 79********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.1E-10	1	24	IPR009057	Homeodomain-like
Pfam	PF14379	9.5E-20	71	115	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MKVMGVPGLT LYHLKSHLQK YRLSKNLNGQ ANYQKYQKYR LVAMAEEKSH DANEIHTESF 60 SIGQPTEKNL PISEALQMQV EVQQRLHEQL ERHLQLRIEA HGKYLQAVLE KAHETLGKQN 120 LGTDGIEAAK VQLSELASKV SAEYSHTTFQ EPKELQSLHP QQMETYPSVC SLDSSLTSRE 180 RNQTIPKIVE NRLGLRPYHG DSKSEQKEIS EQQLFQRLEL AWSEGQRETR TYFSTMVNDT 240 EARISSSERS LGNLSIGIGL YGQKGQENTG YTEERTKKDE DCKFETRNQK GMDSTTELDL 300 NTHGENYDTA RPKQFDLNGF SWN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:15592750}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010524968.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269\|PubMed:15592750}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019056726.1	0.0	PREDICTED: myb-related protein 2-like isoform X2
Refseq	XP_019056728.1	0.0	PREDICTED: myb-related protein 2-like isoform X5
Swissprot	Q9SQQ9	1e-144	PHL9_ARATH; Myb-related protein 2
TrEMBL	A0A1I9LRR6	1e-143	A0A1I9LRR6_ARATH; Homeodomain-like superfamily protein
STRING	XP_010524965.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.2	1e-146	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis. Plant Sci., 2017. 263: p. 219-225 [PMID:28818378]