PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010524751.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C3H
Protein Properties Length: 455aa    MW: 48494.4 Da    PI: 8.2689
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010524751.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.21.2e-125075227
                    -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                    +++ C +++rtG C yG+rC+F+H++
  XP_010524751.1 50 DQPDCIYYLRTGACGYGSRCRFNHPQ 75
                    6899********************97 PP
2zf-CCCH39.78.3e-1398122327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     ++lC++f+rtGtCk+G++Ck++H++
  XP_010524751.1  98 QPLCQHFMRTGTCKFGASCKYHHPR 122
                     79*********************96 PP
3zf-CCCH39.96.8e-13143167226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ++++C++++rtG+Ck+G++C+F+H+
  XP_010524751.1 143 GEKECSYYMRTGQCKFGATCRFHHP 167
                     7899********************9 PP
4zf-CCCH41.62.1e-13301326126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +++++C++f+rtG Ck+G++C+F+H+
  XP_010524751.1 301 PGQPECQYFMRTGDCKFGSSCRFHHP 326
                     5789*********************9 PP
5zf-CCCH30.27.6e-10349373327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +lC +f + G+Ck+G++C+F H++
  XP_010524751.1 349 APLCTHFTQHGFCKFGPSCRFDHSM 373
                     68*********************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.7844876IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-54875IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-105075IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-65176IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-55475IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.19295123IPR000571Zinc finger, CCCH-type
SMARTSM003568.4E-795122IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-698123IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-1098122IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-5100122IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.446141169IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-6142168IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-10143167IPR000571Zinc finger, CCCH-type
SMARTSM003566.0E-6143168IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4147166IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.183300328IPR000571Zinc finger, CCCH-type
SMARTSM003563.5E-7300327IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-10302326IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-6304329IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.5E-5306325IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.723346374IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-6346373IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.15E-6349377IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-7349372IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-6351374IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MERYGRAGEE GSRSDPSPEW SAPGGVTGVE ASMWRLGLQT VGESYPERPD QPDCIYYLRT  60
GACGYGSRCR FNHPQDRGAV IGAAARGDAG EFPERVGQPL CQHFMRTGTC KFGASCKYHH  120
PRQGSSSSST VTLNYMGYPL YPGEKECSYY MRTGQCKFGA TCRFHHPLAP DVQVLSPPPP  180
LPPTAQAIYP TVQSQSVPSS QQYGVVMAQP PLLPGSYVQS PYGPMVLPPG MVPYSGWNPY  240
AASVSAIPSP GSQPSVGSSS VYGIRPLSPS GPAHAAPYQS RPSSVDPSST FPKEQLFPQR  300
PGQPECQYFM RTGDCKFGSS CRFHHPLDAV SLKTSVVIGP VGLPLRPGAP LCTHFTQHGF  360
CKFGPSCRFD HSMDSLSYTP SASPLADMAA APYHIGSSLG TLAPSPISSS SKEIVSPKTR  420
TSDSETVVPA TVSSRNGGLS RPELSGSSLE PRSSS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010524751.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010524751.10.0PREDICTED: zinc finger CCCH domain-containing protein 34-like
SwissprotQ6NPN30.0C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBLA0A1J3IQY40.0A0A1J3IQY4_NOCCA; Zinc finger CCCH domain-containing protein 58
STRINGXP_010524751.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17792786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.11e-166C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]