PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010524725.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

FAR1

Protein Properties

Length: 751aa MW: 85666.4 Da PI: 7.1433

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010524725.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65.6	1.3e-20	59	152	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 +fY+++Ak++GFs+r+++++ + + it+r+f+C + g+++ + +++ k +r+r+++r+gC+a +++ k+ +w+vt +++ HnHel XP_010524725.1 59 EFYCSFAKQCGFSIRRHRTRGKdGVGRGITRRDFTCHRGGYPQMKPSEDGKMHRNRKSSRCGCRAYMRIVKRAdfdVPEWRVTGFSNVHNHELL 152 6*************999887455667****************9***************98887676789***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.4E-17	59	152	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.5E-20	275	366	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.483	540	588	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.0E-6	562	586	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	4.4E-5	563	590	IPR006564	Zinc finger, PMZ-type
Pfam	PF04434	5.3	660	671	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 751 aa Download sequence Send to blast
MSEATSAAME SSDNGTDLSQ DDTGGVKETH EETILSQQTS VNLVPYVGQR FVSQDAAYEF 60 YCSFAKQCGF SIRRHRTRGK DGVGRGITRR DFTCHRGGYP QMKPSEDGKM HRNRKSSRCG 120 CRAYMRIVKR ADFDVPEWRV TGFSNVHNHE LLKSNEVRLL PAYCTMSQDD KTRICMFSKA 180 GMSVRQMLRL MELEKGLKLG SLPFTEVDVR NFLQSFRNVG HDYDPVDLLA MCKRKKDENP 240 CFRYDFKLDG HSRVEHIGWC YASSVQLYES FGDAVLLDTT QRLDSYDMLL GVWIGMDNFG 300 ATCFFGCVLL RDESIESFSW ALKTFLAFVN SKAPQTLLTD HNIKLKEAIA TEMPETKHAI 360 CVWHIIARFS DWFSTLLGSH YDDWKKEFYH LYSLESVEEF EAQWKDVISK YGLHGNKHAS 420 SLYALRSYWA LPFLRRYFFS GLLISWQTET VSGYIQRILS AQTCLDQFVD QVSEIVETTD 480 RGGTTKQKSQ KKSQKLCMKT GSPIECHAAS VLTPYAFTKL QEELLLAPQY AYLLIEEGCF 540 QVRHHTQLEG GCKVIWLPCQ EHISCSCHHY EFSGILCRHV LRVLSSNNCF QIPDQYLPVR 600 WRVNPFKPSA KDHSERIQML ESMTSKLLSE SIESEERLDF ACEQMGMVLS RVKNLSPPVQ 660 RATDITCSCP SDSLILPEMD DADGIHSYAM GNFHDPATLG KLKDRRLRDG GDVSRRRKPF 720 SGACYGQYGH DLSHCQLLGS DSLNGDALGY L

Sequence ? help Back to Top

Protein Sequence Length: 751 aa Download sequence Send to blast

MSEATSAAME SSDNGTDLSQ DDTGGVKETH EETILSQQTS VNLVPYVGQR FVSQDAAYEF  60
YCSFAKQCGF SIRRHRTRGK DGVGRGITRR DFTCHRGGYP QMKPSEDGKM HRNRKSSRCG  120
CRAYMRIVKR ADFDVPEWRV TGFSNVHNHE LLKSNEVRLL PAYCTMSQDD KTRICMFSKA  180
GMSVRQMLRL MELEKGLKLG SLPFTEVDVR NFLQSFRNVG HDYDPVDLLA MCKRKKDENP  240
CFRYDFKLDG HSRVEHIGWC YASSVQLYES FGDAVLLDTT QRLDSYDMLL GVWIGMDNFG  300
ATCFFGCVLL RDESIESFSW ALKTFLAFVN SKAPQTLLTD HNIKLKEAIA TEMPETKHAI  360
CVWHIIARFS DWFSTLLGSH YDDWKKEFYH LYSLESVEEF EAQWKDVISK YGLHGNKHAS  420
SLYALRSYWA LPFLRRYFFS GLLISWQTET VSGYIQRILS AQTCLDQFVD QVSEIVETTD  480
RGGTTKQKSQ KKSQKLCMKT GSPIECHAAS VLTPYAFTKL QEELLLAPQY AYLLIEEGCF  540
QVRHHTQLEG GCKVIWLPCQ EHISCSCHHY EFSGILCRHV LRVLSSNNCF QIPDQYLPVR  600
WRVNPFKPSA KDHSERIQML ESMTSKLLSE SIESEERLDF ACEQMGMVLS RVKNLSPPVQ  660
RATDITCSCP SDSLILPEMD DADGIHSYAM GNFHDPATLG KLKDRRLRDG GDVSRRRKPF  720
SGACYGQYGH DLSHCQLLGS DSLNGDALGY L

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010524725.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010524725.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 11-like
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A061EQQ0	0.0	A0A061EQQ0_THECC; Far1-related sequence 11 isoform 1
STRING	XP_010524725.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1765	26	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]