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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010524402.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | C2H2 | ||||||||
Protein Properties | Length: 357aa MW: 40294.2 Da PI: 6.512 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.7 | 0.00039 | 4 | 26 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC C ksF + L H+r+H XP_010524402.1 4 YKCRFCFKSFVNGRALGGHMRSH 26 9*********************9 PP | |||||||
2 | zf-C2H2 | 14 | 0.00015 | 234 | 256 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC C+k+F++ L H +H XP_010524402.1 234 YKCDTCDKVFKSYQALGGHRASH 256 9************9999998887 PP | |||||||
3 | zf-C2H2 | 11.3 | 0.0011 | 285 | 307 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C ++F++ L H r+H XP_010524402.1 285 HECPICLRVFPSGQALGGHKRSH 307 79******************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 1.5E-4 | 3 | 27 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.93E-8 | 3 | 26 | No hit | No description |
PROSITE profile | PS50157 | 10.055 | 4 | 26 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.027 | 4 | 26 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 6 | 26 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.93E-8 | 229 | 256 | No hit | No description |
Pfam | PF13912 | 1.9E-12 | 234 | 258 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.596 | 234 | 261 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.013 | 234 | 256 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 236 | 256 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 9.2E-13 | 285 | 307 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 8.808 | 285 | 307 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.12 | 285 | 307 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 287 | 307 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence Send to blast |
MERYKCRFCF KSFVNGRALG GHMRSHMLSL SARRERFDVD EDERPSPLSD ESESGGLFPS 60 SSASSSSASS DDDDDDDGHV GEFYGLRENR KRSTLVADPD FAFPVVDHGS VLLQDGESET 120 ESSRINPTRR RSKRTRKLGG LDVDHSRGQD NVKKPRTSQL GFRTEPEHLS SASDTTTEED 180 LAFCLMMLSR DKWKQKSKSR EVQDQDNNDH GEEENDMDES QGYRESKNRA RGKYKCDTCD 240 KVFKSYQALG GHRASHKKNR VCRTEHPRRA TEYEVGNAVA EKKIHECPIC LRVFPSGQAL 300 GGHKRSHGIV SSNQNHVLRV DKDASLTNRR FIDLNLPAPT EDDETSQAEV SVVFDEC |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00416 | DAP | Transfer from AT3G60580 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010524402.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010524399.1 | 0.0 | PREDICTED: zinc finger protein ZAT4 isoform X1 | ||||
Refseq | XP_010524400.1 | 0.0 | PREDICTED: zinc finger protein ZAT4 isoform X2 | ||||
Refseq | XP_010524401.1 | 0.0 | PREDICTED: zinc finger protein ZAT4 isoform X1 | ||||
Refseq | XP_010524402.1 | 0.0 | PREDICTED: zinc finger protein ZAT4 isoform X1 | ||||
Swissprot | Q9M202 | 1e-91 | ZAT9_ARATH; Zinc finger protein ZAT9 | ||||
TrEMBL | D7LRS3 | 4e-99 | D7LRS3_ARALL; Zinc finger family protein | ||||
STRING | XP_010524399.1 | 0.0 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60580.1 | 1e-90 | C2H2-like zinc finger protein |