PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010524400.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C2H2
Protein Properties Length: 357aa    MW: 40294.2 Da    PI: 6.512
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010524400.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.00039426123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ykC  C ksF +   L  H+r+H
  XP_010524400.1  4 YKCRFCFKSFVNGRALGGHMRSH 26
                    9*********************9 PP
2zf-C2H2140.00015234256123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ykC  C+k+F++   L  H  +H
  XP_010524400.1 234 YKCDTCDKVFKSYQALGGHRASH 256
                     9************9999998887 PP
3zf-C2H211.30.0011285307123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++Cp+C ++F++   L  H r+H
  XP_010524400.1 285 HECPICLRVFPSGQALGGHKRSH 307
                     79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.5E-4327IPR007087Zinc finger, C2H2
SuperFamilySSF576671.93E-8326No hitNo description
PROSITE profilePS5015710.055426IPR007087Zinc finger, C2H2
SMARTSM003550.027426IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576671.93E-8229256No hitNo description
PfamPF139121.9E-12234258IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.596234261IPR007087Zinc finger, C2H2
SMARTSM003550.013234256IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280236256IPR007087Zinc finger, C2H2
PfamPF139129.2E-13285307IPR007087Zinc finger, C2H2
PROSITE profilePS501578.808285307IPR007087Zinc finger, C2H2
SMARTSM003550.12285307IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280287307IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MERYKCRFCF KSFVNGRALG GHMRSHMLSL SARRERFDVD EDERPSPLSD ESESGGLFPS  60
SSASSSSASS DDDDDDDGHV GEFYGLRENR KRSTLVADPD FAFPVVDHGS VLLQDGESET  120
ESSRINPTRR RSKRTRKLGG LDVDHSRGQD NVKKPRTSQL GFRTEPEHLS SASDTTTEED  180
LAFCLMMLSR DKWKQKSKSR EVQDQDNNDH GEEENDMDES QGYRESKNRA RGKYKCDTCD  240
KVFKSYQALG GHRASHKKNR VCRTEHPRRA TEYEVGNAVA EKKIHECPIC LRVFPSGQAL  300
GGHKRSHGIV SSNQNHVLRV DKDASLTNRR FIDLNLPAPT EDDETSQAEV SVVFDEC
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00416DAPTransfer from AT3G60580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010524400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010524399.10.0PREDICTED: zinc finger protein ZAT4 isoform X1
RefseqXP_010524400.10.0PREDICTED: zinc finger protein ZAT4 isoform X2
RefseqXP_010524401.10.0PREDICTED: zinc finger protein ZAT4 isoform X1
RefseqXP_010524402.10.0PREDICTED: zinc finger protein ZAT4 isoform X1
SwissprotQ9M2021e-91ZAT9_ARATH; Zinc finger protein ZAT9
TrEMBLD7LRS34e-99D7LRS3_ARALL; Zinc finger family protein
STRINGXP_010524399.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.11e-90C2H2-like zinc finger protein