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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010524295.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | bHLH | ||||||||
Protein Properties | Length: 351aa MW: 38700.2 Da PI: 7.6227 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.3 | 1.2e-12 | 283 | 328 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + +++L +AveYIk+Lq XP_010524295.1 283 SIAERVRRTRISERMRKLQELVPNM----NKQTNTSDMLDLAVEYIKDLQ 328 689*********************8....789*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.78 | 277 | 327 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 9.29E-16 | 280 | 343 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.11E-12 | 281 | 330 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 9.6E-14 | 282 | 336 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.5E-9 | 283 | 328 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.3E-10 | 283 | 333 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence Send to blast |
MDSNTHHHVY DPNNNIASGS GLLRFRSAPS SLLAAFADDG KGGFDSDRLI SRFVSSNGGT 60 SDLGSPNLSQ FEDKSPVSAV DAAAPPPPQF AGKGIMSSVA MDGSYRFLGM DHHHTKPAES 120 GLVRQSSSPA GMFTNLSVQN GFGSFRSLLN YGTEEEQSPS PNRLKRRCSM SSRPPSSLGM 180 LSQISEIGSE TISSTFQYAH WNDPSSFVED FSMKREPGDD WRMFSGAQNG ESGNPIQLLS 240 HHLSLPTTSS SSDMVSMDKY LQFQGSVPCK IRAKRGCATH PRSIAERVRR TRISERMRKL 300 QELVPNMNKQ TNTSDMLDLA VEYIKDLQRQ FKVLSEIRAN CRCVNEEEKE M |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010524295.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010524295.1 | 0.0 | PREDICTED: transcription factor bHLH130 | ||||
Swissprot | Q66GR3 | 1e-162 | BH130_ARATH; Transcription factor bHLH130 | ||||
TrEMBL | A0A1J3CQZ4 | 1e-173 | A0A1J3CQZ4_NOCCA; Uncharacterized protein | ||||
STRING | XP_010524295.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6293 | 27 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42280.1 | 1e-135 | bHLH family protein |
Publications ? help Back to Top | |||
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