PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010524221.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family G2-like
Protein Properties Length: 337aa    MW: 36803.1 Da    PI: 6.8044
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010524221.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like107.86e-3447101155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl
  XP_010524221.1  47 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 101
                     79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.48544104IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-3246102IPR009057Homeodomain-like
SuperFamilySSF466898.78E-1846101IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-2547102IPR006447Myb domain, plants
PfamPF002491.4E-949100IPR001005SANT/Myb domain
PfamPF143792.7E-23134179IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MFQTSKVLNA NLACRSSLVP GHRLDLTPME PINGGNNANN NPSLASKQRL RWTHELHERF  60
VDAVAQLGGP DRATPKGVLR VMGVQGLTIY HVKSHLQKYR LAKYLPDSSS EGKKTEKKES  120
GDMLSGLDGS SGTQITEALK LQMEVQKRLH EQLEVQRQLQ LRIEAQGKYL KKIIEEQQRL  180
SGVLGEPSAQ GTGDNFPERD NNNDPVTPAP TSESPIQENS GKEGGQEKSL SVDESLSSYR  240
EPLTPDSGCN YDSTHESPRG EEERSSKKPR LARGAVGDSP DVVAAPPPIL ESGLNTLYHQ  300
KTKPPAFVLK GQFDHPSGSL VGRSEDGLDK VSGENLT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-2347104158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-2347104158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-2347104158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-2347104158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00252DAPTransfer from AT2G01060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010524221.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010524219.10.0PREDICTED: myb family transcription factor PHL7-like
RefseqXP_010524220.10.0PREDICTED: myb family transcription factor PHL7-like
RefseqXP_010524221.10.0PREDICTED: myb family transcription factor PHL7-like
RefseqXP_010524222.10.0PREDICTED: myb family transcription factor PHL7-like
SwissprotQ9SJW01e-154PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLR0FQU21e-153R0FQU2_9BRAS; Uncharacterized protein
STRINGXP_010524219.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.11e-117G2-like family protein