PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010524115.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ERF
Protein Properties Length: 291aa    MW: 33026.6 Da    PI: 6.3712
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010524115.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.12.5e-192979155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    ++y+GVr++  +g+WvAeIr+p++   r+r +lg+f t eeAa a++aa++kl+g
  XP_010524115.1 29 CRYRGVRQRT-WGKWVAEIREPKK---RTRLWLGSFSTSEEAAMAYDAAALKLYG 79
                    78*****999.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.5E-142979IPR001471AP2/ERF domain
CDDcd000182.42E-222989No hitNo description
Gene3DG3DSA:3.30.730.104.4E-303088IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-223088IPR016177DNA-binding domain
SMARTSM003801.5E-383093IPR001471AP2/ERF domain
PROSITE profilePS5103223.7233087IPR001471AP2/ERF domain
PRINTSPR003673.6E-103142IPR001471AP2/ERF domain
PRINTSPR003673.6E-105369IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MDSYRKPSPL KPWKKGPARG KGGPQNALCR YRGVRQRTWG KWVAEIREPK KRTRLWLGSF  60
STSEEAAMAY DAAALKLYGP DAYLNLPHLQ SNNTEPPQNG RAKWVPSRKF ISLFPSCSLL  120
NVNAQPSVHA IHQRLEELKK TGLLSRNNSS KTNNNNNNNN TCLVVDGKTR EDEPRQKAEQ  180
DKSIEVSTDM DDQKKKKPEI DLTEFLQQLG ILKQDNQDEA SDVLECHSAT SGKYQDQEPE  240
SSFEDQIFNW DTLTGASTTQ QFHGSNLQTY DLDDDDSIFP SSIWNFCESL D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-173187360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00411DAPTransfer from AT3G57600Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010524115.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010524115.10.0PREDICTED: dehydration-responsive element-binding protein 2F isoform X2
RefseqXP_010524123.10.0PREDICTED: dehydration-responsive element-binding protein 2F isoform X1
SwissprotQ9SVX51e-108DRE2F_ARATH; Dehydration-responsive element-binding protein 2F
TrEMBLD7LVU71e-109D7LVU7_ARALL; Uncharacterized protein
STRINGXP_010524123.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81682638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.11e-102ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]