PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010524074.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family WRKY
Protein Properties Length: 265aa    MW: 29535.7 Da    PI: 6.5084
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010524074.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.95.6e-3092150259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+ ++itY ++Hnh+
  XP_010524074.1  92 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRVDPTKIVITYASDHNHP 150
                     69*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.3E-3183152IPR003657WRKY domain
SuperFamilySSF1182909.02E-2687152IPR003657WRKY domain
SMARTSM007746.3E-3591151IPR003657WRKY domain
PROSITE profilePS5081132.01992152IPR003657WRKY domain
PfamPF031066.2E-2593150IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MDQNLKTLPS LLQSFSGQAK STVEMHRRAQ RSDEEDDDTY DGVTPDSPSS CEDSKIRKTS  60
SKKRRNMKKR VVSVPVADVE GSKSRGEAYP PSDSWAWRKY GQKPIKGSPY PRGYYRCSSS  120
KGCPARKQVE RSRVDPTKIV ITYASDHNHP LPSAATKPHH HRNHTVARKD ADVDTAEADA  180
TPGLDLSHVD VPTLLGGCYC EPDEFGWFYD VAISGGADVA MEEVEEESLF SDLGDLPDCA  240
AVFRRRTVAK EEQNRRCDFG LCDYS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B5e-2169153680Disease resistance protein RRS1
5w3x_D5e-2169153680Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010524074.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010524074.10.0PREDICTED: probable WRKY transcription factor 69
SwissprotQ93WV51e-114WRK69_ARATH; Probable WRKY transcription factor 69
TrEMBLA0A1J3GCN71e-110A0A1J3GCN7_NOCCA; Putative WRKY transcription factor 69 (Fragment)
STRINGXP_010524074.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM124781930
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58710.21e-107WRKY DNA-binding protein 69
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]