PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010523740.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family BES1
Protein Properties Length: 687aa    MW: 76595.1 Da    PI: 6.1571
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010523740.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822145.44.9e-45642011131
          DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyr...kgskpl..eeaeaag.ssasas 89 
                     ggs+r+++ +E+E++k+RER+RRai+a+i+ GLR++Gny+l++raD+n+V++AL+reAGwvv +DGtt++   +g++p+  ++++ a  ss+ as
  XP_010523740.1  64 GGSRRSRPLEEKERTKLRERHRRAITARILGGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPsksQGTRPPggSSTAGASlSSQMAS 158
                     689******************************************************************98888999997533333331444478 PP

          DUF822  90 pesslq.sslkssalaspvesysaspksssfpspssldsisla 131
                     +++s   ++  s  ++s  e  s+ +k + +p ps +d  ++ 
  XP_010523740.1 159 QQTSPPaLRGLSPGFKSSGEFNSCHMKGVFVPTPSPYDLSPTG 201
                     88887779999********************999999876553 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056871.6E-3965219IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514455.65E-170245684IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.801.1E-184248683IPR013781Glycoside hydrolase, catalytic domain
PfamPF013738.6E-96254672IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.0E-63285299IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.0E-63306324IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.0E-63328349IPR001554Glycoside hydrolase, family 14
PROSITE patternPS005060332340IPR018238Glycoside hydrolase, family 14, conserved site
PRINTSPR008422.6E-5411420IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR007501.0E-63421443IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.0E-63494513IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.0E-63528544IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.0E-63545556IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.0E-63563586IPR001554Glycoside hydrolase, family 14
PRINTSPR008422.6E-5566576IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR007501.0E-63603625IPR001554Glycoside hydrolase, family 14
PRINTSPR008422.6E-5653667IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR008422.6E-5668682IPR001371Glycoside hydrolase, family 14B, plant
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 687 aa     Download sequence    Send to blast
MATDMQKLIG TSEEDDDEEM DLDVKEEDDG DQQNRGRHAV QGSCSNEFMH QQSFQDQVST  60
PGGGGSRRSR PLEEKERTKL RERHRRAITA RILGGLRRHG NYNLRVRADI NDVIAALARE  120
AGWVVLPDGT TFPSKSQGTR PPGGSSTAGA SLSSQMASQQ TSPPALRGLS PGFKSSGEFN  180
SCHMKGVFVP TPSPYDLSPT GITQPAEMVS SVNKTEALPH AGSTVDAINA KQVSEIPRNL  240
TEQDFSGTPY VPVYMMLPLG VINMKCELAD RDGLLKHLRT LKSINVDGVK VDCWWGIVEG  300
NSPQEYNWTG YRQLFQIVRD LNLKIQVLMS FHECGGNVGD DVCIPLPHWV AEIGRSNPDI  360
YFTDREGRRN PECLSWGIDK ERVFRGRTAL EVYFDYMRSF RIELAEFFED GIISMIDIGL  420
GPCGELRYPS CPIKHGWRYP GIGEFQCYDK YLLKSLRKAA EARGHLFWAR GPDNAGSYNS  480
QPHETGFFCD GGDYDDFYGR FFLKWYSQVL IDHTDRVLSL AKLAFEGTCI AAKLPGVHWW  540
YRTVSHAAEI TAGFYNPCNH DGYAAVASVL KKHGACLNYA PGEVHVVNRS EDFSGALAEP  600
EALAWQASNA AWDADIPIAR ESALPFHDGG YNKILASAKF LNDPDRRHVS CFAYSRLNPA  660
LMEAQNLVEF ERFVKKMHGE AVMDQPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wds_A1e-13925068011444Beta-amylase
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010523740.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010523740.10.0PREDICTED: beta-amylase 7
SwissprotO808310.0BAM7_ARATH; Beta-amylase 7
TrEMBLV4KMT30.0V4KMT3_EUTSA; Beta-amylase
STRINGXP_010523740.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29452535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45880.10.0beta-amylase 7
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]