|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
XP_010523708.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
|
Family |
MIKC_MADS |
Protein Properties |
Length: 254aa MW: 29226.2 Da PI: 8.9349 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
XP_010523708.1 | genome | NCBI | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 98.2 | 3.5e-31 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
krienk+nrqvtfskRrng+lKKA+ELSvLCdae+a+iifs++gklye+
XP_010523708.1 9 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEIALIIFSTRGKLYEFG 58
79**********************************************95 PP
|
2 | K-box | 85.4 | 1.2e-28 | 76 | 176 | 4 | 99 |
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk......ekelqeenk 92
s+++ e++++s++qe++kLk+++e+L r+qRhllGedL++++++eLq Le+qLe +l+ R++K+++++e++eel+kk e++l ++nk
XP_010523708.1 76 SQDN-RVERETQSWYQEVTKLKAKYESLLRTQRHLLGEDLGQMNVRELQTLEKQLEVALSMTRQRKTQVMMEHMEELRKKsslewqERQLGDINK 169
4455.456779********************************************************************9665555678888888 PP
K-box 93 aLrkkle 99
+Lr kle
XP_010523708.1 170 QLRIKLE 176
8888876 PP
|
Protein Features
? help Back to Top |
|
Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
SMART | SM00432 | 1.4E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 33.165 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.54E-43 | 2 | 70 | No hit | No description |
SuperFamily | SSF55455 | 3.4E-32 | 2 | 86 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-32 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.6E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-32 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-32 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.9E-25 | 82 | 175 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 16.048 | 85 | 181 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0009553 | Biological Process | embryo sac development |
GO:0009911 | Biological Process | positive regulation of flower development |
GO:0010094 | Biological Process | specification of carpel identity |
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem |
GO:0010582 | Biological Process | floral meristem determinacy |
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
GO:0048455 | Biological Process | stamen formation |
GO:0048459 | Biological Process | floral whorl structural organization |
GO:0048509 | Biological Process | regulation of meristem development |
GO:0048833 | Biological Process | specification of floral organ number |
GO:0080060 | Biological Process | integument development |
GO:0080112 | Biological Process | seed growth |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 254 aa
Download sequence Send
to blast |
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEIALIIFST RGKLYEFGSV 60 GIGKTIERYQ RSYSCSQDNR VERETQSWYQ EVTKLKAKYE SLLRTQRHLL GEDLGQMNVR 120 ELQTLEKQLE VALSMTRQRK TQVMMEHMEE LRKKSSLEWQ ERQLGDINKQ LRIKLEAEGH 180 CFNAIQDLWA NSAAAVAGPS TSSFHLQSSH PNSMDCDTEP FLQIGFQQHY VQGEGSSVTK 240 SAACETNFVQ GWVL
|
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Probable transcription factor. Forms a heterodimer via the K-box domain with AG, that could be involved in genes regulation during floral meristem development. |