PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010523694.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
|
||||||||
Family | GRF | ||||||||
Protein Properties | Length: 502aa MW: 55576.3 Da PI: 8.6088 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 73.4 | 2.5e-23 | 100 | 144 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+ep rCrRtDGKkWRC ++vl+ +k+C+rH+hrgr+rsrk +e+ XP_010523694.1 100 DPEPTRCRRTDGKKWRCGNDVLPFQKYCQRHMHRGRKRSRKLVES 144 79***************************************9986 PP | |||||||
2 | WRC | 62.3 | 7.2e-20 | 374 | 411 | 2 | 39 |
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrs 39 +epgrCrRtDGKkWRCs+++l+ +k+C +H+hrg +++ XP_010523694.1 374 NEPGRCRRTDGKKWRCSKEALPFQKYCPKHMHRGVKKR 411 79********************************8875 PP | |||||||
3 | QLQ | 47.2 | 7e-17 | 35 | 69 | 3 | 37 |
QLQ 3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +T aQlq++ +Q++Ay+y++a+ P+Pp+Ll++i++ XP_010523694.1 35 MTEAQLQEFQMQAMAYRYISAGHPLPPHLLVPIWN 69 8*********************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 1.6E-9 | 33 | 69 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 18.862 | 34 | 69 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 2.7E-11 | 35 | 68 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 23.99 | 100 | 144 | IPR014977 | WRC domain |
Pfam | PF08879 | 2.3E-19 | 101 | 143 | IPR014977 | WRC domain |
PROSITE profile | PS51667 | 20.814 | 373 | 420 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.7E-16 | 375 | 411 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 502 aa Download sequence Send to blast |
METQSPRSNC AEAKPEKSGA AGEERKSPPW KRETMTEAQL QEFQMQAMAY RYISAGHPLP 60 PHLLVPIWNS LALSWSRHLS MVHHLHRLSY QEFYQREMVD PEPTRCRRTD GKKWRCGNDV 120 LPFQKYCQRH MHRGRKRSRK LVESSEIASS DPKASMEDGS DSFSCHQTMA SSSSSKAPVV 180 TIASYADEDK SSTIQDSVSL SSFVSLASTN KSVTIECNGS GRNVDLNDND KSNRFMSDDF 240 IMKKQKDMIY RHGRLPSVQS EPKDKPGRYP EITGKQCRSS EDGLFIGKYL REHLQSGTEV 300 SGPPLEAADF IDSSKKDIST RNRLTGCNYS AKSSGMNVTG CMVPGIHFSP DSVLQGSLLF 360 GHGGFPLNRA ETENEPGRCR RTDGKKWRCS KEALPFQKYC PKHMHRGVKK RPGDTKAVAN 420 TGVSVSYSMA VTAAGSASCK DKDDHNAKLN TELSVSVLAN PLVGRGCEEK STSSCSTDTT 480 ITDTALRGED KDKDDLSTCS GV |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 133 | 140 | GRKRSRKL |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_010523694.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010523694.1 | 0.0 | PREDICTED: growth-regulating factor 9 isoform X1 | ||||
STRING | XP_010523694.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13760 | 20 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G45480.1 | 5e-76 | growth-regulating factor 9 |