PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010523416.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C2H2
Protein Properties Length: 487aa    MW: 53725.1 Da    PI: 9.0693
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010523416.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.51.1e-057395123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C+ C+k F r  nL+ H r H
  XP_010523416.1 73 FVCEVCNKGFQREQNLQLHRRGH 95
                    89*******************88 PP
2zf-C2H213.40.00023149171123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC++C+k++  +s+ k H +t+
  XP_010523416.1 149 WKCEKCSKRYAVQSDWKAHSKTC 171
                     58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.5E-67295IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.4E-77295No hitNo description
SMARTSM003550.00417395IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.0947395IPR007087Zinc finger, C2H2
PfamPF121713.1E-57395IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002807595IPR007087Zinc finger, C2H2
SMARTSM00355110114144IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.1E-5137170IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.4E-7144169No hitNo description
SMARTSM00355130149169IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MSSSYTISSS SAQPFLFHCP AGGENDFNPK ETIMQPQIPS APQKKRRNQP GNPKPDAEVI  60
ALSPKTLMAT NRFVCEVCNK GFQREQNLQL HRRGHNLPWK LKQKSNKEVK RKVYLCPEPT  120
CVHHDPSRAL GDLTGIKKHY YRKHGEKKWK CEKCSKRYAV QSDWKAHSKT CGTKEYRCDC  180
GTIFSRRDSF ITHRAFCDAL MQETLRNPTV SFTAMAAAPG SGGRIGLYGP RLGGGALSQN  240
MDNNTNSSFT PVGVYNLNRS FPDNMQRLGV GMNRADKFGD FVPRTSNPNS SAFFMQCPSS  300
QGLMTRNDPS FFNQLQLDPT NLQTNNNNNN FFNVGFFQEI NAKNSQTNVP SPYSGSLVHH  360
QHQDNLNVSS NISAAALLQR ATQMGSTAHN NDPSALIRGL VSSSNAADVQ NIGGQMENDN  420
DNLQGLMNSL ASDGGGSGGI FDVHFCDDNA DICGSGKLTL DFLGVNGRDH HRSLEAGMKF  480
SQPNNLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-33145211369Zinc finger protein JACKDAW
5b3h_F2e-33145211369Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000305|PubMed:19726569}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010523416.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by gibberellin. {ECO:0000305|PubMed:17933900}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010523416.10.0PREDICTED: protein indeterminate-domain 4, chloroplastic-like isoform X1
RefseqXP_010523417.10.0PREDICTED: protein indeterminate-domain 4, chloroplastic-like isoform X1
RefseqXP_010523418.10.0PREDICTED: protein indeterminate-domain 4, chloroplastic-like isoform X1
RefseqXP_010523419.10.0PREDICTED: protein indeterminate-domain 4, chloroplastic-like isoform X1
SwissprotQ8GYC10.0IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic
TrEMBLR0HIV80.0R0HIV8_9BRAS; Uncharacterized protein
STRINGXP_010523416.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36781759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02080.10.0indeterminate(ID)-domain 4
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]