PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010523408.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C2H2
Protein Properties Length: 433aa    MW: 48594.1 Da    PI: 9.1577
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010523408.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.61.1e-057698123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y C++C++ F r  nL+ H r+H
  XP_010523408.1 76 YICEICNQGFQRDQNLQMHRRRH 98
                    89********************9 PP
2zf-C2H215.74.4e-05155177123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C+k +  +s++k H++t+
  XP_010523408.1 155 WVCQKCSKGYAVQSDYKAHLKTC 177
                     58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.52E-57399No hitNo description
Gene3DG3DSA:3.30.160.601.2E-57598IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.8667698IPR007087Zinc finger, C2H2
SMARTSM003550.00657698IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807898IPR007087Zinc finger, C2H2
SMARTSM0035596119149IPR015880Zinc finger, C2H2-like
SMARTSM0035566155182IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MRSGAMLGAS KNSIPSSSTC CFVVPNSSSS SSDIFPSSSD NGVATHKRKR RPAGTPDPEA  60
EVVSLSPRTL LESDRYICEI CNQGFQRDQN LQMHRRRHKV PWKLLKRDNN DQEVKKRVYV  120
CPEPSCLHHD PRHALGDLVG IKKHFRRKHS EHKQWVCQKC SKGYAVQSDY KAHLKTCGTR  180
GHSCDCGRVF SRVESFIEHQ DSCKVRRATH HQPPPPAACP SRTTSIASTP SSDAVARVPP  240
QLVGGQTVPT PVLPPIFICS RDNTMNKNNH LELQLLPFMS DNPNPNRKTP EEEPFDTNLN  300
LFITPLSHPH NSNISKCSTS MVYDQTKELA GEDVNMAMKE KTYVEEVRQE AKRQREMAEI  360
EYTNAKRIRQ QAQAELERAK LLKEQATKKI SAAITHVTCQ SCKRQFPATA MRSFLPAAAH  420
ETSVVVSYVS GCE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-17153203555Zinc finger protein JACKDAW
5b3h_F2e-17153203555Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells. Required for stem circumnutation movements. Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Acts cooperatively with IDD16 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:16813575, ECO:0000269|PubMed:18259878, ECO:0000269|PubMed:24039602, ECO:0000269|PubMed:9210330}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010523408.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010523408.10.0PREDICTED: protein SHOOT GRAVITROPISM 5-like
SwissprotF4IPE31e-160IDD15_ARATH; Zinc finger protein SHOOT GRAVITROPISM 5
TrEMBLA0A397XVA21e-169A0A397XVA2_BRACM; Uncharacterized protein
TrEMBLA0A3P5YCK91e-169A0A3P5YCK9_BRACM; Uncharacterized protein
STRINGXP_010523408.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69328131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01940.11e-161C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kim JY,Ryu JY,Baek K,Park CM
    High temperature attenuates the gravitropism of inflorescence stems by inducing SHOOT GRAVITROPISM 5 alternative splicing in Arabidopsis.
    New Phytol., 2016. 209(1): p. 265-79
    [PMID:26256266]
  3. Ryu JY,Kim JY,Park CM
    Adaptive thermal control of stem gravitropism through alternative RNA splicing in Arabidopsis.
    Plant Signal Behav, 2015. 10(11): p. e1093715
    [PMID:26452406]
  4. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]
  5. Shi H, et al.
    Zinc finger of Arabidopsis thaliana 6 is involved in melatonin-mediated auxin signaling through interacting INDETERMINATE DOMAIN15 and INDOLE-3-ACETIC ACID 17.
    J. Pineal Res., 2018. 65(2): p. e12494
    [PMID:29607541]