PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010523301.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 173aa MW: 19878.8 Da PI: 8.8875 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.4 | 2.9e-19 | 65 | 118 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe ++++ e++ +LAk+lgL+ rqV +WFqNrRa++k XP_010523301.1 65 KKRRLSVEQVKALEKNFEIENKLEPERKVKLAKELGLQPRQVAIWFQNRRARWK 118 456899***********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 130.2 | 7.9e-42 | 64 | 154 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrls eqvk+LE++Fe e+kLeperKv+la+eLglqprqva+WFqnrRAR+ktkql++dy +Lk++ydalk+++++L++++++L +++ XP_010523301.1 64 EKKRRLSVEQVKALEKNFEIENKLEPERKVKLAKELGLQPRQVAIWFQNRRARWKTKQLDRDYGVLKANYDALKRNRDALQRDNDSLLQQV 154 69*************************************************************************************9887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.31E-20 | 44 | 122 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.8E-18 | 63 | 124 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 17.07 | 64 | 120 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.0E-16 | 65 | 118 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.17E-17 | 65 | 121 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-20 | 67 | 126 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 3.1E-6 | 91 | 100 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 95 | 118 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 3.1E-6 | 100 | 116 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 5.8E-14 | 120 | 155 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MKRSLGSSES LGAFMSVCRT SGADEQMMSP RSTTNFLYTN VQDFPAMIDD DEGCHVAVAC 60 GGGEKKRRLS VEQVKALEKN FEIENKLEPE RKVKLAKELG LQPRQVAIWF QNRRARWKTK 120 QLDRDYGVLK ANYDALKRNR DALQRDNDSL LQQVIYLLCV FFNYGANYID LMI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 112 | 120 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that acts as a positive regulator of ABA-responsiveness, mediating the inhibitory effect of ABA on growth during seedling establishment. Binds to the DNA sequence 5'-CAATNATTG-3'. {ECO:0000269|PubMed:12678559}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010523301.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:12678559, ECO:0000269|PubMed:16055682}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010523301.1 | 1e-128 | PREDICTED: homeobox-leucine zipper protein ATHB-5-like isoform X1 | ||||
Swissprot | P46667 | 1e-65 | ATHB5_ARATH; Homeobox-leucine zipper protein ATHB-5 | ||||
TrEMBL | A0A1J3CE44 | 2e-65 | A0A1J3CE44_NOCCA; Homeobox-leucine zipper protein ATHB-5 | ||||
TrEMBL | E4MXK0 | 2e-67 | E4MXK0_EUTHA; mRNA, clone: RTFL01-23-D07 | ||||
STRING | XP_010523301.1 | 1e-127 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM545 | 28 | 143 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65310.1 | 6e-68 | homeobox protein 5 |
Publications ? help Back to Top | |||
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