PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

ERF

Protein Properties

Length: 192aa MW: 21384.7 Da PI: 4.9666

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010523231.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.3	6.9e-17	91	141	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp + k +r++lg+f t +Aa+a++ a+ kl+g XP_010523231.1 91 HYRGVRRRP-WGKFAAEIRDPAK--KGTRIWLGTFETDLDAARAYDFAAFKLRG 141 7******.******954..34******99***********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	3.2E-31	90	150	IPR001471	AP2/ERF domain
Pfam	PF00847	1.4E-11	91	141	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.44E-22	91	150	IPR016177	DNA-binding domain
SMART	SM00380	1.5E-34	91	155	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	24.843	91	149	IPR001471	AP2/ERF domain
CDD	cd00018	7.41E-29	91	149	No hit	No description
PRINTS	PR00367	4.5E-13	92	103	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.5E-13	131	151	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
MATVEEISTL EFMQKNLFED FKIPDGFMED FDFDSSSLSD LWCVEPVNPV PKQEPDSPVL 60 DPDSSSAPVL SDMKTSPPAQ NEATKLEETR HYRGVRRRPW GKFAAEIRDP AKKGTRIWLG 120 TFETDLDAAR AYDFAAFKLR GRKAILNFPL DAGKYDAPAN SGRKRRRSNG GSSSHRSLSS 180 SSSTDDDTIS DA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	8e-29	90	150	4	64	ATERF1
3gcc_A	8e-29	90	150	4	64	ATERF1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	162	166	RKRRR
2	162	167	RKRRRS

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010523231.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC777373	0.0	KC777373.1 Cleome spinosa ESM1-like (At3g14210-like), ERF-like (At5g07580-like), and WD40 repeat-like superfamily protein (At5g07590-like) genes, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010523231.1	1e-139	PREDICTED: ethylene-responsive transcription factor ERF107-like
Swissprot	Q9LY05	3e-75	EF106_ARATH; Ethylene-responsive transcription factor ERF106
TrEMBL	T1SFX4	1e-121	T1SFX4_9ROSI; ERF-like
STRING	XP_010523231.1	1e-138	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3229	27	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G07580.1	2e-52	ERF family protein

Publications ? help Back to Top
Kim H,Go YS,Suh MC DEWAX2 Transcription Factor Negatively Regulates Cuticular Wax Biosynthesis in Arabidopsis Leaves. Plant Cell Physiol., 2018. 59(5): p. 966-977 [PMID:29425344]