PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010523194.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 607aa    MW: 70245.6 Da    PI: 5.986
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010523194.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.50.000564344711355
                     HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     R+r N++f  L +++P+ +       ++K +iL  +++Y+ +L+
  XP_010523194.1 434 RRRENEKFRLLGSMVPTvD------EVDKESILNNTIKYLWELE 471
                     6777*************55......9**************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.4E-4917204IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS508889.07421470IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0025430476IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.18E-7434484IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000830.00131434475No hitNo description
Gene3DG3DSA:4.10.280.103.0E-6436481IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 607 aa     Download sequence    Send to blast
MGDYEEGNDE VERHRRLRKQ LAVAVRSVQW SYAIFWCSSP TQHGVLEWGE GYYNGGMKKR  60
KKSYDEEMDD EFKARCKYGL LRSKQLRQLY LCMLEGDTTP TADYGTILSP EDLTDEEWYY  120
LLCMSYAFSL GQGLPGISLA TGETIWLCNA QYAESKLFTR SLLARSASIQ TVVCFPFSGG  180
VIELGATDLT AEDHNLLQHV KACFLDTSKP HCFPEDFSAG QNTNSDDDHN RTGFWISQEN  240
FHQLGDHSER DRQVTLDLGS EEDMHYRRTV STLLRYAACR RNKPQHRPLN LPSSDSSSSF  300
LRWKRRGTSN VKRQRQPQHP QNGLRKILYN VPLMHYNDDT QRTFERETFV QNEEIPIEYG  360
DSSDRRRENE KFRLLGSSNV NRQRQPQHPQ NVLRKILYNV PLMHYNDDTQ RTFERETFVQ  420
NEEIPIEYGD SSDRRRENEK FRLLGSMVPT VDEVDKESIL NNTIKYLWEL EARVEELESC  480
MGSVDFVERQ RKTSIDPSAL IEGTSDNYES TNLVVNYSTP GTAREHSEVR VKVKETEVVI  540
EIRCPYREYI VADIMEAISN LHMDAFSVRS HTLDGSLVLN LKAKFREAAV ASVGMIKREL  600
KRVAGEF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A4e-14172049192Transcription factor MYC3
4rqw_B4e-14172049192Transcription factor MYC3
4rs9_A4e-14172049192Transcription factor MYC3
4yz6_A4e-14172049192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15761KKRKK
Functional Description ? help Back to Top
Source Description
UniProtTrancsription activator, when associated with MYB75/PAP1 or MYB90/PAP2. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010523194.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010523194.10.0PREDICTED: transcription factor MYC1-like
SwissprotQ8W2F11e-111BH012_ARATH; Transcription factor MYC1
TrEMBLA0A3P5Y3440.0A0A3P5Y344_BRACM; Uncharacterized protein
STRINGXP_010523194.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM117701832
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00480.11e-110bHLH family protein