PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010523183.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family WRKY
Protein Properties Length: 347aa    MW: 36914.3 Da    PI: 8.3748
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010523183.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.96.4e-31109167259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dg++WrKYGqK  kg++ pr+YYrCt+a gCpv+k+v+r+aed++++++tYeg+Hnh+
  XP_010523183.1 109 SDGCQWRKYGQKLAKGNPWPRAYYRCTMAiGCPVRKQVQRCAEDTSILITTYEGNHNHP 167
                     7*********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-3293169IPR003657WRKY domain
SuperFamilySSF1182907.98E-28102169IPR003657WRKY domain
PROSITE profilePS5081129.516103169IPR003657WRKY domain
SMARTSM007742.4E-36108168IPR003657WRKY domain
PfamPF031062.3E-26110167IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
IPPHVSIHIL FCWKNDVLEG ASRALEYGSA GALDVKVADQ VPVSTDGAPT TAKRQFSGDR  60
EEHESNAGQI STKTPKFDQT KTDVDQNPDT PFRKARVSVR ARSDNPTISD GCQWRKYGQK  120
LAKGNPWPRA YYRCTMAIGC PVRKQVQRCA EDTSILITTY EGNHNHPLPP AATAMAAAPS  180
AAASMLLSSA TSSSPPPAAA NIFYSSILPY ASTMATLSSS APFPTITLDL TQPPPETSSS  240
ASHFPLRPSQ ILGQFGPPPP VLFPTVNNHS MLRSHHLSGQ TQEQNVVEMV RAAIAADPNF  300
TAALAVAISS IIGNNNNSNT NNNVNAKNGG SPGSPQLPQS CTTFSPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-2295171176WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010523183.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010523183.10.0PREDICTED: probable WRKY transcription factor 47, partial
SwissprotQ9ZSI72e-78WRK47_ARATH; Probable WRKY transcription factor 47
TrEMBLA0A140H8N83e-97A0A140H8N8_MANES; WRKY transcription factor 34
TrEMBLB9RN373e-97B9RN37_RICCO; WRKY transcription factor, putative
STRINGXP_010523183.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM71562743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01720.13e-67WRKY family protein