PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_010523119.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

M-type_MADS

Protein Properties

Length: 311aa MW: 34949.3 Da PI: 8.0655

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010523119.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	52.7	5.4e-17	17	56	11	50
HHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 11 vtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 f +R+ +++KKA+ELS+LC+++v+vi ++++ l++++ XP_010523119.1 17 SVFRRRQSTVIKKAQELSTLCGVDVCVICYGPDESLQTWP 56 4588999********************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	0.0015	6	58	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	9.559	13	55	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.7E-13	16	55	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.49E-13	16	87	IPR002100	Transcription factor, MADS-box
CDD	cd00266	5.71E-17	19	83	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MVSSSSSSDK KLSQHNSVFR RRQSTVIKKA QELSTLCGVD VCVICYGPDE SLQTWPQDID 60 KVRDIAFKYR SLDDTLRRKR SLNLSSFLDK IEHNHGRDSM DLGTRVDGLS PDRLSELGGL 120 LERNILCLKQ RLRFIESEKH KAAANKKIDD AQISSSCQPI LGQTQSVNFP VNPRFSRFGM 180 DEQNAAAMLD WNAFSENGYN NSLQYAYCNP GFNGAMVPER RRMIQQNLMA NGGGSGGWPC 240 NGLGFSETGM GGESRGMNME MEWTNSGLLV PQGYMNNNHL MFNPQHPQFR TQTQTPPLLQ 300 FAPFSDIHNI N

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010523119.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010523118.1	1e-131	PREDICTED: agamous-like MADS-box protein AGL81
STRING	XP_010523119.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM566	20	126

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39750.1	2e-28	AGAMOUS-like 81