PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010523118.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family M-type_MADS
Protein Properties Length: 259aa    MW: 29162.1 Da    PI: 9.9196
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010523118.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.95.6e-1822611150
                    HHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF 11 vtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                      f +R+ +++KKA+ELS+LC+++v+vi ++++g l++++
  XP_010523118.1 22 SVFRRRQSTVIKKAQELSTLCGIDVCVICYGPDGSLQTWP 61
                    4588999********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.4E-41163IPR002100Transcription factor, MADS-box
PROSITE profilePS5006610.3581860IPR002100Transcription factor, MADS-box
PfamPF003198.1E-141960IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-132193IPR002100Transcription factor, MADS-box
CDDcd002661.29E-152488No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MVSSIAFSSS SFSGKKLSQQ NSVFRRRQST VIKKAQELST LCGIDVCVIC YGPDGSLQTW  60
PQDIDKIRDI DFKYRSLDDT LRRKRSLNLS SFLNKIEHSH GHDSMDLTIK VDGFSSDRFS  120
ELGGLLERNI LCLKQRLTFI ESEKYKTAAN KKIDDVQISS SCQSIFGQTQ SVNLPINPRI  180
FFGFVMDEQN AAAMLGGNAF PDNGCNNSPQ YAYYNPGFNR TMIPERRRRR VIQQNLMING  240
CGSGGALQRF RVSKKGDGR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010523118.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010523118.10.0PREDICTED: agamous-like MADS-box protein AGL81
STRINGXP_010523118.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56620126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39750.11e-27AGAMOUS-like 81