PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010522999.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C2H2
Protein Properties Length: 375aa    MW: 42684.8 Da    PI: 5.797
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010522999.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.6e-05155178123
                     EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                     y C+ Cg+ ++++ +Lk+H r  H
  XP_010522999.1 155 YICGVCGRKCKTNLDLKKHFRQlH 178
                     89*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10102.9E-875145IPR029060PIN domain-like
PROSITE profilePS5015710.887155183IPR007087Zinc finger, C2H2
PROSITE patternPS000280157178IPR007087Zinc finger, C2H2
CDDcd061671.06E-9167292No hitNo description
Gene3DG3DSA:3.40.50.10102.9E-8223277IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MNLFCNSIDT LFLKPLLPHK NHFLSISSDA PATLRNPNFA SAARTRRCQI KACFSSASSS  60
EIDMVRNKEG VFTPKEKKVV VLWDLDNKPP RGPPFAAATE LRRVAEKLGR VVEISAYANR  120
HAFTPLPQWV VEERRERKQL DILERKGVVR SPDPYICGVC GRKCKTNLDL KKHFRQLHER  180
ERQKKMNRMK SLKGKKRRQY KERYINGNDK YNEAAESLIX ISKVEDKPQA ADWALKRQMQ  240
HSMTRGIDWL VLVSDDSDFS DMLRKAREAN LGTVVIGDGG RALGRIADLW VPWNGVESGE  300
ITEADLVPSD RRIFDGDGDG DSGDGLFSIS YYDDGFGELE SDGFGSFRVS AFSEDEWMED  360
EDDYMLSDDD DDDDL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1191197LKGKKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010522999.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010522999.10.0PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104801424
TrEMBLA0A178UA350.0A0A178UA35_ARATH; Uncharacterized protein
TrEMBLQ9FJ910.0Q9FJ91_ARATH; AT5g52010/MSG15_9
STRINGXP_010522999.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125842429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52010.11e-172C2H2-like zinc finger protein