PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010522995.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

bZIP

Protein Properties

Length: 366aa MW: 41066.6 Da PI: 9.0105

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010522995.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	23.9	9.3e-08	245	291	17	63
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 17 ArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 A+rsR RK ++i+eLe+ v++L+ae ++ el+ l+++ l e+ XP_010522995.1 245 AQRSRVRKIQYIAELERNVQALQAEGSEVSAELDFLNQQNLILSVEN 291 89**********************************99987776665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.6E-4	234	293	IPR004827	Basic-leucine zipper domain
CDD	cd14703	1.41E-16	235	284	No hit	No description
Gene3D	G3DSA:1.20.5.170	5.2E-6	245	287	No hit	No description
SuperFamily	SSF57959	9.64E-6	245	287	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
MASSKGSQNL RNLPYSGKQA FLPPKSPFPG GSTFCTDFVP HGFIGSKAVQ KPREGNAHHH 60 RTSSESFLME EQPSWLDDLL NEPETPVRKG GHRRSSSDSF AYVDAANVSD MHYSLWDDGR 120 NKNSFAGHAR GPKEFDDLKD AQHVSFYPAF HLAKPKNKAW DSISDAGARP SNSSLFLENT 180 SVPNPGSSSV PYETERISCA VDGKMAHATQ FSNNFCKVSA DKKDNSQAKL AASEADTKRA 240 RQQFAQRSRV RKIQYIAELE RNVQALQAEG SEVSAELDFL NQQNLILSVE NKTLKQRLES 300 LAQEQLIKYL EHEVLEKEIV RLRALYQQQQ QLEPQQQTKK QASSSSHQRS KSRDLESQFS 360 NLSLRP

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

MASSKGSQNL RNLPYSGKQA FLPPKSPFPG GSTFCTDFVP HGFIGSKAVQ KPREGNAHHH  60
RTSSESFLME EQPSWLDDLL NEPETPVRKG GHRRSSSDSF AYVDAANVSD MHYSLWDDGR  120
NKNSFAGHAR GPKEFDDLKD AQHVSFYPAF HLAKPKNKAW DSISDAGARP SNSSLFLENT  180
SVPNPGSSSV PYETERISCA VDGKMAHATQ FSNNFCKVSA DKKDNSQAKL AASEADTKRA  240
RQQFAQRSRV RKIQYIAELE RNVQALQAEG SEVSAELDFL NQQNLILSVE NKTLKQRLES  300
LAQEQLIKYL EHEVLEKEIV RLRALYQQQQ QLEPQQQTKK QASSSSHQRS KSRDLESQFS  360
NLSLRP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010522995.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010522994.1	0.0	PREDICTED: uncharacterized protein At4g06598 isoform X1
Refseq	XP_010522995.1	0.0	PREDICTED: uncharacterized protein At4g06598 isoform X3
Refseq	XP_010522996.1	0.0	PREDICTED: uncharacterized protein At4g06598 isoform X1
Refseq	XP_019056573.1	0.0	PREDICTED: uncharacterized protein At4g06598 isoform X2
Swissprot	Q8W3M7	1e-110	Y4598_ARATH; Uncharacterized protein At4g06598
TrEMBL	R0HB87	1e-168	R0HB87_9BRAS; Uncharacterized protein
STRING	XP_010522994.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G06598.1	1e-136

Publications ? help Back to Top
Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4. DNA Res., 2001. 8(6): p. 285-90 [PMID:11853315]