PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010522703.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 320aa    MW: 36060.4 Da    PI: 7.663
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010522703.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.94.8e-05198240754
                     HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       Er R +ri + +  L+ellP+++    + ++  +iL  +v ++k L
  XP_010522703.1 198 STERERKQRIEDNIKALQELLPNPV---EGTPE--SILNDVVAHVKLL 240
                     57*********************94...33333..4666666666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.27E-4175245No hitNo description
SuperFamilySSF474593.4E-7190251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.296191240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-6193250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MEGKSNQHII SYDCGKNASI FSGDNRNHHH QAESGLSLSQ WLHPSRFPRS YLALLNEDSK  60
SPENASVTDV LETRDSPTGS TYVARRVQII QTDMAANFNI RSEEASGSTF PNRVACNVKP  120
SVRVQSDVKF NHETSESYGK EQAENRYLDR FGHPRSQNHA EKLGFQRNCR RTTSRNSSRL  180
CHNLRGIRPT ASRLKSYSTE RERKQRIEDN IKALQELLPN PVEGTPESIL NDVVAHVKLL  240
QLQIKELSRS RLGGEPTSHP FISIEGYGHY IHHEQMMNKP LEEIMAELIG DDPDAATCLL  300
ESKGLYLVPL AFVPGFCPVP
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010522703.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010522703.10.0PREDICTED: transcription factor bHLH82
TrEMBLA0A1J3EDV13e-71A0A1J3EDV1_NOCCA; Transcription factor bHLH69
STRINGXP_010522703.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM129561621
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30980.13e-16LJRHL1-like 2