PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

HB-other

Protein Properties

Length: 1766aa MW: 198320 Da PI: 5.3622

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010522590.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.3	1.3e-18	21	76	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +kR+ t+ qle+Le+ ++ ++yps+++r+eL+ klgL++rq ++WF+ rR k++k XP_010522590.1 21 SKRQMKTAAQLEVLENSYAVEPYPSESTRAELSVKLGLSDRQLQMWFCHRRLKDRK 76 589***************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.9E-18	6	77	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.601	17	77	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.71E-16	17	77	IPR009057	Homeodomain-like
SMART	SM00389	4.8E-18	19	81	IPR001356	Homeobox domain
Pfam	PF00046	3.6E-16	21	76	IPR001356	Homeobox domain
CDD	cd00086	1.68E-14	22	77	No hit	No description
SMART	SM00571	2.0E-22	542	601	IPR018501	DDT domain
PROSITE profile	PS50827	17.171	542	601	IPR018501	DDT domain
Pfam	PF02791	8.7E-18	543	598	IPR018501	DDT domain
Pfam	PF05066	6.3E-16	724	791	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	4.2E-8	963	1003	IPR028942	WHIM1 domain
Pfam	PF15613	2.5E-14	1138	1210	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1766 aa Download sequence Send to blast
MEAGAEAENN KTPEGGETKS SKRQMKTAAQ LEVLENSYAV EPYPSESTRA ELSVKLGLSD 60 RQLQMWFCHR RLKDRKQTPT KRQRKDSTAA NANELAAAVE AGNEPTSFGN ESDPRRAVMR 120 SSTTVPRVGG DVMVARQYNE PSPEMDMAAE FRAIAFVEAQ LGERLREDGP ILGMEFDPLP 180 PGAFGMPIEM PSHRKPHAQA FESNLYERAD AKPVKDYVRP VREYQFLPEL PSSRTDLSER 240 VSPSHHSGVP LDASIIRASS VSGGHPYSHR DENVPYGYGY STQIPNLNLS SHQPKVGNVF 300 SPSSGEYDSA PRKNYMGDAA HGNFDTHPIH TVENSFVMSE RKAGNDDDVM RLERKRKSEE 360 ARIAREVEAH EKKIRKDLEK QDMLRRKREE QIRKEMERQD RERRKEEERL FRERQREEER 420 YLKEQRREML RREKFLIKET IRAEKMRQKE ELRREKEAAR LRAANERAIA RKIAKESMEL 480 IEDERLELMD LAASSRGLPS MLALDFETLQ NLDTYRDKQM AFPPTSVKLK KPFAIRPWNC 540 SEENVGNLLM VWRFLITFAD ILGLWPFTLD EFAQALHDYD CRLMGEVHIV LLRTVIKDIE 600 DVARAMSIGV GANQNAASNP GGGHPHIVEG AYAWGFAIRC WKHHLNTLTW PEILRQLALS 660 AGFGPQLKKP YIEQLSTHED NEVNNSENVI FSLLNGIAAE NAFAKMQERG FSNSRRSRHR 720 LTPGTVKFAA FHILSLEGEK GLTILDVAEK IQQSGLRDLT TSKTPEASIA AALSRDTKLF 780 ERVAPSTYCV RAPYRKDAGD AEAILAEARE RIRIFKSGAT DVEDVEDAER DEDSESDVGD 840 DPEVDDLGAD LNPKKEDPGA QMTENSINVK PISEDGTLSA EDGKSELGLS LSRFHSDDIK 900 DEKKERNSVD MKEEKEESSV VRMEGETKVS SLIDQSVEDA GTNDEKTCMD QEDVCFDEGK 960 LGESWVLALI EGEYSDLSVE ERLNALVALI GVAIEGNTIR VALEERLEAA SALKKQMWAE 1020 VQLDKRRIKE EFFIRTDFPG TKPEPNITFP VSEERKSPSL AIAERNNDMP LDQNSSREHL 1080 SFAQNDRCEI NNVQKQEARS GADNFQYQQQ GYVADRERLR AQLKAYVGYK AEELHAYRSL 1140 PLGQDRRRNR YWRFTASASR SDPGCGRIFV ELHNNRWRII DSEESFDSLI KSLDVRGVRE 1200 SHLHFMLQKI EPSFKEAIRR NAVRASTDGT RKDVALYTTC SNLGSPNGSS VSGLDSDTCE 1260 ISTTFNIELD GNKTEIQSGL KRYREFEKWM WENMLRSDML SAYKYGVGKG KPPLLCICSS 1320 CGEIYLTEGA HCLGCRQQLS PGTRELCFAE QVARLGDSDF VLRGPVSCLL RIRLIKIQLA 1380 LVEASLPPEA LRAIWTENSR KSWGLRLLSS KTPEDLLQVL TTLESVLKKD CLSSNFETTS 1440 ELLGLSEEEH DPSAVCGSIS VLPWIPKTTS AVALRLFGLD FSISYTPNQK TDAHKGKESE 1500 DFIVSEANVL RNTRDNDATT EIPSRAIYSQ EENWEEASII GISGSGRGRP RGRGRPRSRG 1560 GKSAKTGGRS VLGSRRAAAN SNGEGLEQSL RRKAQSRVPA GGGRKRGRRS TRTRKRPTKG 1620 ALGISNNGEL HNTGLSGATP PAMQEDNDWN ETPEPHGGEE ASSSGRSFQY NYDDGQAIVD 1680 EYDDGFDDGS LGKVVGRGEF NLHSDEEYEE EDRENMNMDA VGFGNEDSDG EEAGNAYDRS 1740 IDGRKTFPYE DPHLTPSSSS SSGFSD

Sequence ? help Back to Top

Protein Sequence Length: 1766 aa Download sequence Send to blast

MEAGAEAENN KTPEGGETKS SKRQMKTAAQ LEVLENSYAV EPYPSESTRA ELSVKLGLSD  60
RQLQMWFCHR RLKDRKQTPT KRQRKDSTAA NANELAAAVE AGNEPTSFGN ESDPRRAVMR  120
SSTTVPRVGG DVMVARQYNE PSPEMDMAAE FRAIAFVEAQ LGERLREDGP ILGMEFDPLP  180
PGAFGMPIEM PSHRKPHAQA FESNLYERAD AKPVKDYVRP VREYQFLPEL PSSRTDLSER  240
VSPSHHSGVP LDASIIRASS VSGGHPYSHR DENVPYGYGY STQIPNLNLS SHQPKVGNVF  300
SPSSGEYDSA PRKNYMGDAA HGNFDTHPIH TVENSFVMSE RKAGNDDDVM RLERKRKSEE  360
ARIAREVEAH EKKIRKDLEK QDMLRRKREE QIRKEMERQD RERRKEEERL FRERQREEER  420
YLKEQRREML RREKFLIKET IRAEKMRQKE ELRREKEAAR LRAANERAIA RKIAKESMEL  480
IEDERLELMD LAASSRGLPS MLALDFETLQ NLDTYRDKQM AFPPTSVKLK KPFAIRPWNC  540
SEENVGNLLM VWRFLITFAD ILGLWPFTLD EFAQALHDYD CRLMGEVHIV LLRTVIKDIE  600
DVARAMSIGV GANQNAASNP GGGHPHIVEG AYAWGFAIRC WKHHLNTLTW PEILRQLALS  660
AGFGPQLKKP YIEQLSTHED NEVNNSENVI FSLLNGIAAE NAFAKMQERG FSNSRRSRHR  720
LTPGTVKFAA FHILSLEGEK GLTILDVAEK IQQSGLRDLT TSKTPEASIA AALSRDTKLF  780
ERVAPSTYCV RAPYRKDAGD AEAILAEARE RIRIFKSGAT DVEDVEDAER DEDSESDVGD  840
DPEVDDLGAD LNPKKEDPGA QMTENSINVK PISEDGTLSA EDGKSELGLS LSRFHSDDIK  900
DEKKERNSVD MKEEKEESSV VRMEGETKVS SLIDQSVEDA GTNDEKTCMD QEDVCFDEGK  960
LGESWVLALI EGEYSDLSVE ERLNALVALI GVAIEGNTIR VALEERLEAA SALKKQMWAE  1020
VQLDKRRIKE EFFIRTDFPG TKPEPNITFP VSEERKSPSL AIAERNNDMP LDQNSSREHL  1080
SFAQNDRCEI NNVQKQEARS GADNFQYQQQ GYVADRERLR AQLKAYVGYK AEELHAYRSL  1140
PLGQDRRRNR YWRFTASASR SDPGCGRIFV ELHNNRWRII DSEESFDSLI KSLDVRGVRE  1200
SHLHFMLQKI EPSFKEAIRR NAVRASTDGT RKDVALYTTC SNLGSPNGSS VSGLDSDTCE  1260
ISTTFNIELD GNKTEIQSGL KRYREFEKWM WENMLRSDML SAYKYGVGKG KPPLLCICSS  1320
CGEIYLTEGA HCLGCRQQLS PGTRELCFAE QVARLGDSDF VLRGPVSCLL RIRLIKIQLA  1380
LVEASLPPEA LRAIWTENSR KSWGLRLLSS KTPEDLLQVL TTLESVLKKD CLSSNFETTS  1440
ELLGLSEEEH DPSAVCGSIS VLPWIPKTTS AVALRLFGLD FSISYTPNQK TDAHKGKESE  1500
DFIVSEANVL RNTRDNDATT EIPSRAIYSQ EENWEEASII GISGSGRGRP RGRGRPRSRG  1560
GKSAKTGGRS VLGSRRAAAN SNGEGLEQSL RRKAQSRVPA GGGRKRGRRS TRTRKRPTKG  1620
ALGISNNGEL HNTGLSGATP PAMQEDNDWN ETPEPHGGEE ASSSGRSFQY NYDDGQAIVD  1680
EYDDGFDDGS LGKVVGRGEF NLHSDEEYEE EDRENMNMDA VGFGNEDSDG EEAGNAYDRS  1740
IDGRKTFPYE DPHLTPSSSS SSGFSD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1548	1558	RPRGRGRPRSR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269\|PubMed:22694359, ECO:0000269\|PubMed:23872538}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010522590.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010522590.1	0.0	PREDICTED: LOW QUALITY PROTEIN: homeobox-DDT domain protein RLT2
Swissprot	Q9FFH1	0.0	RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBL	A0A178UEB6	0.0	A0A178UEB6_ARATH; RLT2
STRING	XP_010522590.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9601	25	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	Homeodomain-like transcriptional regulator