PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010522411.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | Dof | ||||||||
Protein Properties | Length: 299aa MW: 31356.2 Da PI: 7.8139 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 122.3 | 1.7e-38 | 49 | 109 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++alkcprC+s ntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg+rk k+++ XP_010522411.1 49 HHQALKCPRCNSLNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRAK 109 57899****************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 7.0E-30 | 41 | 107 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 4.2E-33 | 51 | 107 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.59 | 53 | 107 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 55 | 91 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MQDIHHHSMV CGGGGVAGGA GRFFSGGIGG GGGGGGDRRL RAHQSQHNHH QALKCPRCNS 60 LNTKFCYYNN YNLSQPRHFC KSCRRYWTKG GVLRNVPVGG GCRKTKRAKS KQPSSSSSSA 120 AAGKQTPDTE GEGKSSASHS SSESSSLTAS ASAGVRPGSA SAAEVASVPI SGYGVNNTRI 180 YGSGIEWSAL IGEGSSDVGV FTEMGNFTSL ISTVPTNETA AFGFGGNSVN PNQQCLDHQT 240 AQVDFPVRSS DPVVGFGPLD WGGEEGDQSL FDLTSTVDHA YWNQSQWTTD QDHTGLYLP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00570 | DAP | Transfer from AT5G60850 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010522411.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010522411.1 | 0.0 | PREDICTED: dof zinc finger protein DOF5.4 | ||||
Swissprot | Q8LDR0 | 1e-96 | DOF54_ARATH; Dof zinc finger protein DOF5.4 | ||||
TrEMBL | R0GRD1 | 1e-98 | R0GRD1_9BRAS; Uncharacterized protein | ||||
STRING | XP_010522411.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4482 | 26 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60850.1 | 1e-93 | OBF binding protein 4 |
Publications ? help Back to Top | |||
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