PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010522310.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

FAR1

Protein Properties

Length: 823aa MW: 93673.6 Da PI: 6.3855

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010522310.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	74.6	2.1e-23	95	180	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fY+eYA++vGF +++++s++sk++g++++ + Cs+ g +++ + ++r+ +tgCka +++k+++d+kw++ ++++eHnHe++p XP_010522310.1 95 FYREYARSVGFGITIKASRRSKKSGKFIDVKIACSRFGAKRQPGTG----VNPRSCPKTGCKAGMHMKRKEDEKWVICNFVKEHNHEICP 180 9************************************9998877....99*********************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.3E-20	95	180	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	6.8E-22	262	353	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.742	542	578	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	5.2E-4	550	576	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.9E-4	553	580	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 823 aa Download sequence Send to blast
MEIDLEIPSY DRTLDSGSNV NADGGDSLDG MDVRDVEMDL PTRSGNAIEI CEPSTSGSIG 60 GSLEQFATVD DVNGGAINEP RNGLEFDSKE AAYYFYREYA RSVGFGITIK ASRRSKKSGK 120 FIDVKIACSR FGAKRQPGTG VNPRSCPKTG CKAGMHMKRK EDEKWVICNF VKEHNHEICP 180 DDFYIGVGGK KKQAGDVVHQ KKGLQLALEV EDINLMLDHF MAMQEQQPGF FYAIDLDGEK 240 HVRNVFWLDS KAKHCYDSFS DVVLFDTFYV RNGYKVPFAP FVGVSHHCQY VLLGCALIGE 300 ESASTFSWLF RTWLKAIGGQ APKVIITYQD KLLSEVIMEI LPTARHCFCL WNLLGELPEK 360 LISFVDQYDD FMKSFRECIH GSWTDEQFER RWSEMVGKFE LNRNEWVLSL FNDRKKWAPH 420 YFQGICLAGM SGHEKSGSIA SRFDKHMDSE ATFKDFFIQY TNFLRDTCDV EERFDLESQS 480 RQPTLRSLSP FEKQLSLTYT DSAFKKFQAE VLGVVSCQLH VERKDGTNVI FHVEDFEERE 540 NFYVVWNKEL LDVHCSCHLF ELWGFLCKHA ILVLQTSDVS SIPSQYILKR WSKNGNTSDN 600 RNGKCDSIHS RMARFDDLCR RFVKLGEVAS LSDEAYKTAF KVLEETLTHC VRVNNSAKFP 660 PEPSRLMTSR HFDEGGEDLL DSTSRSSKKK KVHKKRKAYS GPEDTANRSQ EHCQDTQEHV 720 SYRAASFENC YIPRADMEEE PELGSRAATV GVYYPTPQPI QGFSSVPSIQ DGYYGNPPAM 780 QVMMGNVNMG HARMSQSQTQ PSVQGRNFPG TDQFQGNPYS RLF

Sequence ? help Back to Top

Protein Sequence Length: 823 aa Download sequence Send to blast

MEIDLEIPSY DRTLDSGSNV NADGGDSLDG MDVRDVEMDL PTRSGNAIEI CEPSTSGSIG  60
GSLEQFATVD DVNGGAINEP RNGLEFDSKE AAYYFYREYA RSVGFGITIK ASRRSKKSGK  120
FIDVKIACSR FGAKRQPGTG VNPRSCPKTG CKAGMHMKRK EDEKWVICNF VKEHNHEICP  180
DDFYIGVGGK KKQAGDVVHQ KKGLQLALEV EDINLMLDHF MAMQEQQPGF FYAIDLDGEK  240
HVRNVFWLDS KAKHCYDSFS DVVLFDTFYV RNGYKVPFAP FVGVSHHCQY VLLGCALIGE  300
ESASTFSWLF RTWLKAIGGQ APKVIITYQD KLLSEVIMEI LPTARHCFCL WNLLGELPEK  360
LISFVDQYDD FMKSFRECIH GSWTDEQFER RWSEMVGKFE LNRNEWVLSL FNDRKKWAPH  420
YFQGICLAGM SGHEKSGSIA SRFDKHMDSE ATFKDFFIQY TNFLRDTCDV EERFDLESQS  480
RQPTLRSLSP FEKQLSLTYT DSAFKKFQAE VLGVVSCQLH VERKDGTNVI FHVEDFEERE  540
NFYVVWNKEL LDVHCSCHLF ELWGFLCKHA ILVLQTSDVS SIPSQYILKR WSKNGNTSDN  600
RNGKCDSIHS RMARFDDLCR RFVKLGEVAS LSDEAYKTAF KVLEETLTHC VRVNNSAKFP  660
PEPSRLMTSR HFDEGGEDLL DSTSRSSKKK KVHKKRKAYS GPEDTANRSQ EHCQDTQEHV  720
SYRAASFENC YIPRADMEEE PELGSRAATV GVYYPTPQPI QGFSSVPSIQ DGYYGNPPAM  780
QVMMGNVNMG HARMSQSQTQ PSVQGRNFPG TDQFQGNPYS RLF

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010522310.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010522310.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 2
Refseq	XP_010522311.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 2
Refseq	XP_010522312.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 2
Refseq	XP_010522313.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 2
Swissprot	Q3EBQ3	0.0	FRS2_ARATH; Protein FAR1-RELATED SEQUENCE 2
TrEMBL	A0A1J3K3V3	0.0	A0A1J3K3V3_NOCCA; Protein FAR1-RELATED SEQUENCE 2
STRING	XP_010522310.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32250.3	0.0	FAR1-related sequence 2

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]