PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010522175.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bZIP
Protein Properties Length: 437aa    MW: 47970.1 Da    PI: 6.3292
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010522175.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_126.81.1e-08224270551
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 
                     kr++r   NR +A rs +RK  +i+eLe+k+++L++e ++L  +l  
  XP_010522175.1 224 KRAKRIWANRQSAARSKERKMRYIAELERKIQTLQTESTSLSAQLTL 270
                     9****************************************988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003389.6E-13220284IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.105222285IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.1E-6222274No hitNo description
SuperFamilySSF579599.64E-10224274No hitNo description
PfamPF001703.0E-7224268IPR004827Basic-leucine zipper domain
CDDcd147032.45E-23225274No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MDKEKAPAAG GGLPPPSGRY SAFSLNGSSF GMKAESSLPP LAPGSSSDAG AFGHGSESGG  60
FSHDISRMLD NPPKNLGHRR AHSEILTLPD DLGFYSDFGA VGGADGPSFS DEMEDLLSMY  120
LDMDKFDSSA TSSSQVGEPS EPAGRSEGAQ AGPENFGVFV NPEGAPASSS ERTRIRHQHS  180
QSMDGSTIIK PEMLMSVAEE ASPSDTKKAM SADKLAELAL IDPKRAKRIW ANRQSAARSK  240
ERKMRYIAEL ERKIQTLQTE STSLSAQLTL RQRDTSGLTV ENNELKLRLQ TIEQQVHLQD  300
ALNDSLKEEI QHLKVLTGQV ANGASMMNYG SYGSNQQIHR NSQAMHTLLA AQQFQQLQIH  360
SQKQQQQQQL QLQQQQQQQQ QLQQQQQQLF QQQQQQLHQL QRQEQHSLIT DFRTSMPSLT  420
RKESGPSSDL GAKDSGI
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor with an activatory role.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010522175.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010522175.10.0PREDICTED: probable transcription factor PosF21
SwissprotQ040881e-159POF21_ARATH; Probable transcription factor PosF21
TrEMBLA0A2P2M9A71e-177A0A2P2M9A7_RHIMU; Uncharacterized protein MANES_04G039500
STRINGXP_010522175.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24452772
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06070.11e-159bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]